Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5K89_RS13210 Genome accession   NZ_CP081944
Coordinates   2899264..2899899 (+) Length   211 a.a.
NCBI ID   WP_058425437.1    Uniprot ID   A0A1H0L153
Organism   Pseudomonas sp. DR208     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894264..2904899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K89_RS13195 (K5K89_13195) - 2894937..2896307 (+) 1371 WP_222541570.1 sensor histidine kinase -
  K5K89_RS13200 (K5K89_13200) - 2896304..2896819 (-) 516 WP_222541571.1 DUF2062 domain-containing protein -
  K5K89_RS13205 (K5K89_13205) comA 2896955..2899180 (+) 2226 WP_261401104.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5K89_RS13210 (K5K89_13210) exbB 2899264..2899899 (+) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5K89_RS13215 (K5K89_13215) - 2899896..2900324 (+) 429 WP_058425436.1 ExbD/TolR family protein -
  K5K89_RS13220 (K5K89_13220) lpxK 2900324..2901334 (+) 1011 WP_222541572.1 tetraacyldisaccharide 4'-kinase -
  K5K89_RS13225 (K5K89_13225) - 2901359..2901544 (+) 186 WP_003174668.1 Trm112 family protein -
  K5K89_RS13230 (K5K89_13230) kdsB 2901541..2902305 (+) 765 WP_222541573.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5K89_RS13235 (K5K89_13235) - 2902305..2902769 (+) 465 WP_071491863.1 low molecular weight protein-tyrosine-phosphatase -
  K5K89_RS13240 (K5K89_13240) murB 2902766..2903785 (+) 1020 WP_092245147.1 UDP-N-acetylmuramate dehydrogenase -
  K5K89_RS13245 (K5K89_13245) - 2903848..2904519 (-) 672 WP_071491861.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.03 Da        Isoelectric Point: 7.3615

>NTDB_id=598616 K5K89_RS13210 WP_058425437.1 2899264..2899899(+) (exbB) [Pseudomonas sp. DR208]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=598616 K5K89_RS13210 WP_058425437.1 2899264..2899899(+) (exbB) [Pseudomonas sp. DR208]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAGATCCTTGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTCGGCACGGTGTTGGGCATGATCGACATTTTCA
GTTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACTACGGCG
GCCGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0L153

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848