Detailed information NTG0598607

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K5K89_RS04960
• Genome accession: NZ_CP081944
• Coordinates: 1137853..1138719 (-)
• Length: 288 a.a.
• NCBI ID: WP_222540966.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DR208
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1132853..1143719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5K89_RS04925 (K5K89_04925)	-	1133748..1135046 (-)	1299	WP_071491077.1	NAD(P)/FAD-dependent oxidoreductase	-
K5K89_RS04930 (K5K89_04930)	-	1135107..1135280 (-)	174	WP_046034083.1	DUF3094 family protein	-
K5K89_RS04935 (K5K89_04935)	-	1135337..1135966 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
K5K89_RS04940 (K5K89_04940)	-	1136068..1136757 (+)	690	WP_222540964.1	energy-coupling factor ABC transporter permease	-
K5K89_RS04945 (K5K89_04945)	-	1136824..1137039 (+)	216	WP_003171680.1	hypothetical protein	-
K5K89_RS04950 (K5K89_04950)	yacG	1137036..1137236 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
K5K89_RS04955 (K5K89_04955)	coaE	1137233..1137856 (-)	624	WP_222540965.1	dephospho-CoA kinase	-
K5K89_RS04960 (K5K89_04960)	pilD	1137853..1138719 (-)	867	WP_222540966.1	prepilin peptidase	Machinery gene
K5K89_RS04965 (K5K89_04965)	pilC	1138716..1139924 (-)	1209	WP_222540967.1	type II secretion system F family protein	Machinery gene
K5K89_RS04970 (K5K89_04970)	-	1140118..1140540 (+)	423	WP_092240655.1	pilin	-
K5K89_RS04975 (K5K89_04975)	-	1140576..1141976 (+)	1401	WP_222540968.1	O-antigen ligase family protein	-
K5K89_RS04985 (K5K89_04985)	-	1142242..1142547 (+)	306	WP_033903347.1	DUF6388 family protein	-
K5K89_RS04990 (K5K89_04990)	nadC	1142595..1143443 (-)	849	WP_071491085.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31733.88 Da
• Isoelectric Point: 7.3655

>NTDB_id=598607 K5K89_RS04960 WP_222540966.1 1137853..1138719(-) (pilD) [Pseudomonas sp. DR208]
MSLLLGEHPWAFVAIASVLGLIVGSFLNVLVWRLPKMLEREWRAQANEVLGLPAEPAGPTYNLMQPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISIRYPLTELVCSLISAWVAWHFGVGWQAGMVMVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNSLGLLTTLADALWGAVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLVGVF
VGLILMRLRNTLASAPMPFGPYLAIAGWIALLWGGQISDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=598607 K5K89_RS04960 WP_222540966.1 1137853..1138719(-) (pilD) [Pseudomonas sp. DR208]
TTGAGCCTGCTGCTGGGCGAGCATCCCTGGGCGTTTGTTGCGATAGCGTCGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGGGAATGGCGCGCCCAGGCCAATGAAGTGCTGGGCTTGCCAG
CAGAACCAGCCGGGCCGACCTACAACCTGATGCAGCCCAACTCCTGCTGCCCACACTGCAACCATCCCATACGCCCATGG
GAAAATATCCCGCTGCTCAGCTACCTGTTCCTGCGCGGCCGCTGCGCGCATTGCCAAGGGGCGATCAGCATCCGCTACCC
CCTCACGGAACTGGTGTGCAGCTTGATCTCGGCCTGGGTGGCCTGGCATTTCGGAGTTGGCTGGCAGGCAGGAATGGTGA
TGGTGCTGAGTTGGGGGTTGTTGGCGATGAGCCTGATCGACGCCGACCATCAACTGCTGCCGGATGTGCTGGTAATGCCG
CTGCTGTGGCTGGGACTGATCGTCAACAGTCTCGGCCTGCTGACAACATTGGCCGACGCCCTGTGGGGCGCCGTGATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGTTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCCACGGCGACTTCAAGT
TGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGCTGTTGATGGCGTCACTGGTCGGGGTATTT
GTCGGCTTGATCCTGATGCGCCTGCGCAACACCCTGGCGTCGGCACCGATGCCATTTGGACCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAAGCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.688	96.875	0.51
pilD	Vibrio campbellii strain DS40M4	49.286	97.222	0.479
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462