Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5R88_RS13260 Genome accession   NZ_CP081943
Coordinates   2927336..2929558 (-) Length   740 a.a.
NCBI ID   WP_226300097.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2922336..2934558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS13225 (K5R88_13145) murB 2922704..2923723 (-) 1020 WP_008031565.1 UDP-N-acetylmuramate dehydrogenase -
  K5R88_RS13230 (K5R88_13150) - 2923720..2924190 (-) 471 WP_226300095.1 low molecular weight protein-tyrosine-phosphatase -
  K5R88_RS13235 (K5R88_13155) kdsB 2924190..2924954 (-) 765 WP_192420260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5R88_RS13240 (K5R88_13160) - 2924951..2925136 (-) 186 WP_007945752.1 Trm112 family protein -
  K5R88_RS13245 (K5R88_13165) lpxK 2925161..2926171 (-) 1011 WP_226300096.1 tetraacyldisaccharide 4'-kinase -
  K5R88_RS13250 (K5R88_13170) - 2926171..2926602 (-) 432 WP_008031559.1 biopolymer transporter ExbD -
  K5R88_RS13255 (K5R88_13175) exbB 2926599..2927237 (-) 639 WP_008045105.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5R88_RS13260 (K5R88_13180) comA 2927336..2929558 (-) 2223 WP_226300097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5R88_RS13265 (K5R88_13185) - 2929694..2930212 (+) 519 WP_008031552.1 DUF2062 domain-containing protein -
  K5R88_RS13270 (K5R88_13190) - 2931061..2932185 (+) 1125 WP_226299186.1 IS481 family transposase -
  K5R88_RS13275 (K5R88_13195) - 2932309..2933088 (-) 780 WP_008032943.1 ABC transporter permease -
  K5R88_RS13280 (K5R88_13200) - 2933085..2934017 (-) 933 WP_008032944.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81771.04 Da        Isoelectric Point: 10.1575

>NTDB_id=598582 K5R88_RS13260 WP_226300097.1 2927336..2929558(-) (comA) [Pseudomonas sp. MM213]
MRTGMMALALGLLALRFLPVLPPVWLWLVLPVTGLMALPFRTYPLAFFLFGISWAGANAQWALDDRLPAHLDGETRWVEG
RVTGLPQNNDGVVRFELTDVRSRQAEVPQRMRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TIKDGERLREARWAWRDSIRQRLQTVDAQGRTGALIALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGVWPSRLPWLPWACALAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNAVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPVANLLAVPWISLLVLPPAL
LGTLLLPLPYVGEGLLWLAGGLIDWLFKGLGLMAGQLPAWVPTAIPLWIWALGMLGAFLLLMPRGVPLRPLGWPLLLLLV
FPPRPLLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPAMRKLGVNELDLMLISHADADHAGGA
RAVANGLPIKLVLSGDPLALPAELHADACESGQQWTWDGVRFQLWQWPSATDRNQKSCVLQIEAKGERLLLTGDIDSAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLTALQPKAVLISRGNGNSFGHPHPTVMARYKKRGMEIHDSAEQGAIRLHL
GRFDPPWTMRQERRFWRSTQ

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=598582 K5R88_RS13260 WP_226300097.1 2927336..2929558(-) (comA) [Pseudomonas sp. MM213]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGTATTACCGCCGGTCTGGTTATG
GCTGGTGTTGCCCGTAACGGGTTTGATGGCGCTGCCGTTTCGCACGTACCCATTGGCTTTTTTTCTGTTCGGCATCAGTT
GGGCCGGCGCAAATGCGCAGTGGGCGCTGGATGATCGTTTGCCAGCGCATCTCGATGGCGAAACCCGTTGGGTCGAAGGG
CGGGTTACCGGTTTGCCGCAGAACAATGACGGGGTTGTGCGCTTCGAACTGACAGACGTCCGGTCGCGACAGGCCGAGGT
GCCGCAACGGATGCGCCTGGCCTGGTATGACGGACCGCCGGTCAACAGTGGTGAACGCTGGCGGCTCGCGGTGAAGCTGA
AACGTCCTGCCGGGCTGCTCAATCCTCATGCCTTCGATTACGACGCCTGGCTGTTGGCACAACGCATCGGCGCTACCGGA
ACGATCAAGGACGGTGAGCGGCTCAGGGAAGCCCGATGGGCCTGGCGCGACAGCATCCGCCAGCGTTTGCAAACCGTGGA
TGCCCAGGGGCGAACCGGGGCGTTGATTGCGCTGGTGCTGGGGGATGGCGCCGGGCTGAGTCGTGAGGATTGGCAGGTGT
TGCAAGACACCGGCACTGTGCATTTGCTGGTGATTTCCGGACAGCACATCGGTTTGCTGGCGGGGGTGGTTTACCTGCTG
ATTGCCGGACTCGCTCGTTATGGGGTGTGGCCGAGCCGTTTGCCGTGGCTGCCATGGGCCTGCGCACTGGCATTCGCCGC
CGCCCTTGGTTACGGACTGCTGGCGGGGTTCGAAGTACCGGTGCGGCGGGCTTGCGTGATGATCGGCCTGGTGCTGTTGT
GGCGCCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAACGCTGTTTTGTTGCTGGATCCGCTG
GCGAGCCTGCAACCAGGTTTCTGGTTGTCCTTCGCCGCAGTGGCGGTGTTGATCTTCACCTTCGGCGGTCGCTTGGGGCC
GTGGCGATGGTGGCAAACCTGGACCCGTGCTCAATGGCTGATCGCGATCGGACTGGGCCCGTTGCTCTTGGTGTTGGGAT
TGCCGATCAGTCTCAGCGGGCCGGTCGCCAATCTGCTGGCGGTGCCCTGGATCAGTTTGCTGGTATTGCCACCGGCCTTG
CTGGGAACCCTGTTGTTGCCGCTGCCGTATGTGGGCGAGGGCTTGTTGTGGCTGGCAGGTGGGCTGATCGACTGGCTGTT
CAAGGGCCTTGGGTTGATGGCCGGTCAATTGCCAGCGTGGGTGCCCACGGCGATTCCATTGTGGATATGGGCACTGGGCA
TGCTCGGCGCGTTTCTGCTGTTAATGCCTCGCGGTGTACCGCTGCGCCCGCTGGGTTGGCCGTTGTTGCTGTTGCTGGTT
TTTCCACCACGGCCACTTTTGCCGGAGGGCATCGCTGAAGTCTGGCAGCTGGATGTCGGCCAGGGGTTGGCGATTCTGGT
GCGAACTCGCCATCACACGCTGTTGTATGACACCGGACCACGCTTCGGCGACTTCGATCTAGGCGAGCGAGTGGTCCTGC
CAGCGATGCGCAAACTCGGCGTGAACGAACTCGACCTGATGTTGATCAGCCACGCCGACGCCGATCACGCTGGTGGTGCG
CGAGCGGTTGCCAATGGTTTGCCGATAAAGCTGGTGCTCAGCGGTGATCCCTTGGCGCTGCCCGCCGAATTGCACGCCGA
TGCCTGCGAGAGTGGCCAGCAATGGACCTGGGACGGCGTGAGGTTTCAGCTCTGGCAATGGCCTTCGGCCACGGACCGCA
ATCAAAAGTCCTGCGTGCTGCAAATCGAAGCCAAAGGCGAGCGATTATTGCTGACCGGAGACATCGACAGCGCCGCCGAG
CGCGCCCTGCTCGACAGCCCGCTCGCAGTGCCCACCGATTGGTTGCAGGCGCCGCACCACGGTAGCCGCAGCTCGTCGTC
GATGGCGTTGCTCACTGCGTTGCAACCCAAAGCCGTGCTGATCTCTCGCGGCAACGGCAATTCGTTCGGTCACCCGCACC
CCACGGTCATGGCCCGTTATAAAAAACGCGGTATGGAAATCCATGACAGCGCCGAGCAGGGCGCCATCCGTCTGCACCTC
GGACGCTTCGATCCCCCGTGGACGATGCGTCAAGAACGGCGTTTCTGGCGTTCCACGCAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.892

0.619
  comA Ralstonia pseudosolanacearum GMI1000

33.531

100

0.382