Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5R88_RS13255 Genome accession   NZ_CP081943
Coordinates   2926599..2927237 (-) Length   212 a.a.
NCBI ID   WP_008045105.1    Uniprot ID   J3B498
Organism   Pseudomonas sp. MM213     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2921599..2932237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS13220 (K5R88_13140) - 2921985..2922455 (-) 471 WP_008031566.1 (2Fe-2S)-binding protein -
  K5R88_RS13225 (K5R88_13145) murB 2922704..2923723 (-) 1020 WP_008031565.1 UDP-N-acetylmuramate dehydrogenase -
  K5R88_RS13230 (K5R88_13150) - 2923720..2924190 (-) 471 WP_226300095.1 low molecular weight protein-tyrosine-phosphatase -
  K5R88_RS13235 (K5R88_13155) kdsB 2924190..2924954 (-) 765 WP_192420260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5R88_RS13240 (K5R88_13160) - 2924951..2925136 (-) 186 WP_007945752.1 Trm112 family protein -
  K5R88_RS13245 (K5R88_13165) lpxK 2925161..2926171 (-) 1011 WP_226300096.1 tetraacyldisaccharide 4'-kinase -
  K5R88_RS13250 (K5R88_13170) - 2926171..2926602 (-) 432 WP_008031559.1 biopolymer transporter ExbD -
  K5R88_RS13255 (K5R88_13175) exbB 2926599..2927237 (-) 639 WP_008045105.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5R88_RS13260 (K5R88_13180) comA 2927336..2929558 (-) 2223 WP_226300097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5R88_RS13265 (K5R88_13185) - 2929694..2930212 (+) 519 WP_008031552.1 DUF2062 domain-containing protein -
  K5R88_RS13270 (K5R88_13190) - 2931061..2932185 (+) 1125 WP_226299186.1 IS481 family transposase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23083.33 Da        Isoelectric Point: 7.3618

>NTDB_id=598581 K5R88_RS13255 WP_008045105.1 2926599..2927237(-) (exbB) [Pseudomonas sp. MM213]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=598581 K5R88_RS13255 WP_008045105.1 2926599..2927237(-) (exbB) [Pseudomonas sp. MM213]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTTCGCGCCAGTCGTGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCATTGGGCGAGATTCTGGCGGCAGGCTTGGCCAAC
TCCAGACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCGCGGGTGATTCATGAGCTCGAGCGCTACAT
CAATGCGCTGGGCACCATCGCTGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACCGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGGACGGGCATGGGCACCAATGCCGCCGTGCTGGCCGGTGGTATTTCGAAGGCCTTGATCACCACGGCT
GCTGGTCTGATGGTCGGTATCCCTGCGGTATTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGACCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3B498

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.057

0.844