Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NBY13_RS23340 Genome accession   NZ_CP098219
Coordinates   4836632..4837222 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain Z0117EC0013     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4831632..4842222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY13_RS23325 (NBY13_23325) uhpT 4832272..4833663 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  NBY13_RS23330 (NBY13_23330) uhpC 4833801..4835120 (-) 1320 WP_001296565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  NBY13_RS23335 (NBY13_23335) uhpB 4835130..4836632 (-) 1503 WP_001304997.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  NBY13_RS23340 (NBY13_23340) letA 4836632..4837222 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  NBY13_RS23345 (NBY13_23345) - 4837706..4838566 (+) 861 WP_000556883.1 DUF6708 domain-containing protein -
  NBY13_RS23350 (NBY13_23350) ilvN 4838632..4838922 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  NBY13_RS23355 (NBY13_23355) ilvB 4838926..4840614 (-) 1689 WP_000168502.1 acetolactate synthase large subunit -
  NBY13_RS23360 (NBY13_23360) ivbL 4840720..4840818 (-) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  NBY13_RS23365 (NBY13_23365) ysdE 4841063..4841137 (-) 75 WP_211180519.1 protein YsdE -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=598466 NBY13_RS23340 WP_000633668.1 4836632..4837222(-) (letA) [Escherichia coli strain Z0117EC0013]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=598466 NBY13_RS23340 WP_000633668.1 4836632..4837222(-) (letA) [Escherichia coli strain Z0117EC0013]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACTGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCTGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCAGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCGCCGAAAACAGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378