Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   K5J94_RS05160 Genome accession   NZ_CP081502
Coordinates   1055272..1056273 (+) Length   333 a.a.
NCBI ID   WP_159546020.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050272..1061273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS05135 smpB 1051451..1051918 (+) 468 WP_159546030.1 SsrA-binding protein SmpB -
  K5J94_RS05140 - 1052177..1052560 (-) 384 WP_221912567.1 VOC family protein -
  K5J94_RS05145 - 1052571..1053233 (-) 663 WP_159550004.1 NAD(P)H-dependent oxidoreductase -
  K5J94_RS05150 - 1053563..1053871 (+) 309 WP_159546024.1 hypothetical protein -
  K5J94_RS05155 - 1054014..1055099 (-) 1086 WP_159582836.1 Xaa-Pro peptidase family protein -
  K5J94_RS05160 ccpA 1055272..1056273 (+) 1002 WP_159546020.1 catabolite control protein A Regulator
  K5J94_RS05165 - 1056463..1057926 (+) 1464 WP_221912568.1 alpha-amylase -
  K5J94_RS05170 - 1058012..1059010 (+) 999 WP_221912569.1 glycosyltransferase family 4 protein -
  K5J94_RS05175 - 1059012..1060346 (+) 1335 WP_159564696.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36667.66 Da        Isoelectric Point: 5.4594

>NTDB_id=597064 K5J94_RS05160 WP_159546020.1 1055272..1056273(+) (ccpA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAVEEVITILAERHDKIAFVSGPLIDDINGKVRLSGYKNGLKQNHLDYTEGLVFEANYAYSEGYHLAKRVINSG
ATAAYVGEDELAAGLLNGLFDAGINVPADFEIITSNDSPVVEYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGLKRRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=597064 K5J94_RS05160 WP_159546020.1 1055272..1056273(+) (ccpA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAACACTGATGATACAATTACAATATACGACGTTGCGCGTGAAGCAGGTGTATCAATGGCAACTGTCAGTCGTGTTGT
CAATGGCAATAAAAATGTCAAAGAAAACACTCGTAAGAAAGTTCTTGAAGTTATCGATCGTTTAGATTATCGTCCCAACG
CGGTTGCCAGAGGACTGGCAAGCAAAAAAACGACCACAGTAGGTGTTGTGATTCCAAATATTGCCAATAGCTATTTTTCG
ATTTTAGCTAAAGGAATCGACGATATTGCAGCTATGTATAAATATAATATCGTCTTAGCCTCAAGTGATGAAGATGATGA
TAAAGAGGTCAATGTTGTCAATACCCTATTTGCCAAACAGGTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGCGCTGAGTTTTCGCGTTCACGTACACCAATTGTTTTAGCTGGGACCGTTGATTTAGAGCATCAATTACCAAGT
GTTAATATTGATTATAAGGCTGCCGTAGAAGAAGTGATTACAATATTGGCAGAGCGGCATGACAAGATTGCTTTTGTTTC
AGGGCCGCTTATTGATGACATTAATGGGAAAGTTAGATTGTCTGGCTATAAAAATGGCTTAAAACAAAATCATTTGGACT
ATACAGAAGGCTTGGTTTTTGAAGCTAATTATGCTTACAGTGAAGGTTACCACTTAGCCAAGCGTGTGATCAATTCCGGT
GCGACGGCAGCCTATGTTGGTGAGGATGAATTGGCTGCTGGACTTCTCAATGGCTTATTTGATGCTGGCATCAATGTTCC
TGCAGATTTTGAAATTATCACAAGTAATGATTCACCTGTGGTAGAATACACAAGACCTAATCTAAGTTCCATCAGCCAAC
CTGTCTATGACCTAGGAGCAGTAAGCATGCGCATGCTCACAAAAATCATGAATAAAGAAGAGCTCGAAGAAAAAGAAATT
TTGTTAAATCATGGACTAAAAAGACGTGGAACAACCAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

76.276

100

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.079

99.399

0.538