Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5F93_RS21765 Genome accession   NZ_CP081490
Coordinates   4807086..4807721 (-) Length   211 a.a.
NCBI ID   WP_221808914.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4802086..4812721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5F93_RS21730 (K5F93_21730) - 4802479..4802949 (-) 471 WP_102878924.1 (2Fe-2S)-binding protein -
  K5F93_RS21735 (K5F93_21735) murB 4803201..4804220 (-) 1020 WP_221808911.1 UDP-N-acetylmuramate dehydrogenase -
  K5F93_RS21740 (K5F93_21740) - 4804217..4804681 (-) 465 WP_102863923.1 low molecular weight protein-tyrosine-phosphatase -
  K5F93_RS21745 (K5F93_21745) kdsB 4804681..4805445 (-) 765 WP_221808912.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5F93_RS21750 (K5F93_21750) - 4805442..4805627 (-) 186 WP_011060103.1 Trm112 family protein -
  K5F93_RS21755 (K5F93_21755) lpxK 4805651..4806661 (-) 1011 WP_221808913.1 tetraacyldisaccharide 4'-kinase -
  K5F93_RS21760 (K5F93_21760) - 4806661..4807089 (-) 429 WP_102863926.1 ExbD/TolR family protein -
  K5F93_RS21765 (K5F93_21765) exbB 4807086..4807721 (-) 636 WP_221808914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5F93_RS21770 (K5F93_21770) comA 4807824..4810055 (-) 2232 WP_221808915.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5F93_RS21775 (K5F93_21775) - 4810195..4810710 (+) 516 WP_102863929.1 DUF2062 domain-containing protein -
  K5F93_RS21780 (K5F93_21780) - 4810908..4811687 (-) 780 WP_102863930.1 ABC transporter permease -
  K5F93_RS21785 (K5F93_21785) - 4811684..4812616 (-) 933 WP_102863931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22923.10 Da        Isoelectric Point: 7.3617

>NTDB_id=596963 K5F93_RS21765 WP_221808914.1 4807086..4807721(-) (exbB) [Pseudomonas protegens strain PS1]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=596963 K5F93_RS21765 WP_221808914.1 4807086..4807721(-) (exbB) [Pseudomonas protegens strain PS1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCGGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCCATGGCGCCCTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGGGCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872