Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K5F93_RS04605 Genome accession   NZ_CP081490
Coordinates   974418..975746 (-) Length   442 a.a.
NCBI ID   WP_221810763.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PS1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 969418..980746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5F93_RS04570 (K5F93_04570) - 969796..970320 (-) 525 WP_221810758.1 GspH/FimT family protein -
  K5F93_RS04575 (K5F93_04575) pilV 970710..971153 (+) 444 WP_221810759.1 type IV pilus modification protein PilV -
  K5F93_RS04580 (K5F93_04580) - 971150..971860 (+) 711 WP_221810760.1 PilW family protein -
  K5F93_RS04585 (K5F93_04585) - 971902..972342 (+) 441 WP_221810761.1 PilX N-terminal domain-containing pilus assembly protein -
  K5F93_RS04590 (K5F93_04590) - 972686..972847 (+) 162 WP_409565533.1 hypothetical protein -
  K5F93_RS04595 (K5F93_04595) - 972863..973264 (+) 402 WP_221810762.1 type IV pilin protein -
  K5F93_RS04600 (K5F93_04600) thiO 973321..974421 (+) 1101 WP_110652086.1 glycine oxidase ThiO -
  K5F93_RS04605 (K5F93_04605) pilR 974418..975746 (-) 1329 WP_221810763.1 sigma-54-dependent transcriptional regulator Regulator
  K5F93_RS04610 (K5F93_04610) - 975897..976130 (-) 234 WP_221810764.1 PP0621 family protein -
  K5F93_RS04615 (K5F93_04615) - 976255..977277 (-) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  K5F93_RS04620 (K5F93_04620) rluD 977428..978390 (+) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5F93_RS04625 (K5F93_04625) pgeF 978387..979112 (+) 726 WP_221810765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49641.27 Da        Isoelectric Point: 8.0740

>NTDB_id=596954 K5F93_RS04605 WP_221810763.1 974418..975746(-) (pilR) [Pseudomonas protegens strain PS1]
MNPMHRVLVVDEATEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPDTQASALEVGACDLLHKPLHPMRLREWISSRLKRLPTPTKNLPEHPLLGHSSPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKGEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDLPTPSLPPNLDLALHLQ
QVERHLLLQALEASRWNRTVAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=596954 K5F93_RS04605 WP_221810763.1 974418..975746(-) (pilR) [Pseudomonas protegens strain PS1]
ATGAACCCAATGCACAGGGTGCTGGTGGTCGATGAGGCCACGGAAGTCCGTGCCCTCGTGGAAATTACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAACGACCCAGACACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCCCCACAAAAAACCTACCCGAGCATCCGTTGT
TGGGGCATTCATCGCCCATGGACAACCTACGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGCGCCATTCCTGGCGAACTCATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTTGCC
ATGCAAGTGAAGCTACTACGTGCACTGCAGGAAAGGTCTGTGCGTCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGGGCGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGCCCAGGAGATATTGAGATACTGGCGCGGCACATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATAGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACCTCCCCACCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGCAAGCCGCTGGAACCGCACGGTGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGTTTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(7-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.036

100

0.613
  pilR Acinetobacter baumannii strain A118

44.88

100

0.466
  luxO Vibrio cholerae strain A1552

36.952

97.964

0.362