NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	M8779_RS00545	Genome accession	NZ_CP097846
Coordinates	103573..104157 (-)	Length	194 a.a.
NCBI ID	WP_003689924.1	Uniprot ID	Q5F636
Organism	Neisseria gonorrhoeae strain AT159
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 98573..109157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8779_RS00515 (M8779_00515)	-	98993..99292 (+)	300	WP_010359269.1	DUF2818 family protein	-
M8779_RS00520 (M8779_00520)	-	99409..100305 (-)	897	WP_003691917.1	polyprenyl synthetase family protein	-
M8779_RS00525 (M8779_00525)	-	100289..100600 (-)	312	WP_003697631.1	exodeoxyribonuclease VII small subunit	-
M8779_RS00530 (M8779_00530)	rsgA	100626..101549 (-)	924	WP_003689928.1	ribosome small subunit-dependent GTPase A	-
M8779_RS00535 (M8779_00535)	-	101554..103410 (-)	1857	WP_003689927.1	ABC transporter ATP-binding protein	-
M8779_RS00540 (M8779_00540)	-	103436..103573 (-)	138	WP_003689926.1	hypothetical protein	-
M8779_RS00545 (M8779_00545)	ruvA	103573..104157 (-)	585	WP_003689924.1	Holliday junction branch migration protein RuvA	Machinery gene
M8779_RS00550 (M8779_00550)	-	104239..104565 (-)	327	WP_252295655.1	PepSY domain-containing protein	-
M8779_RS00555 (M8779_00555)	-	104626..105312 (-)	687	WP_003689919.1	septal ring lytic transglycosylase RlpA family protein	-
M8779_RS00560 (M8779_00560)	trmL	105440..105904 (-)	465	WP_003689916.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
M8779_RS00565 (M8779_00565)	-	105969..106694 (-)	726	WP_003694234.1	ComF family protein	-
M8779_RS00570 (M8779_00570)	bioH	106693..107442 (+)	750	WP_010359261.1	pimeloyl-ACP methyl ester esterase BioH	-
M8779_RS00575 (M8779_00575)	-	107439..108227 (+)	789	WP_003697625.1	hypothetical protein	-
M8779_RS00580 (M8779_00580)	-	108308..108415 (-)	108	Protein_114	IS5/IS1182 family transposase	-

Sequence

Protein

Download Length: 194 a.a. Molecular weight: 20729.99 Da Isoelectric Point: 6.4967

                                >NTDB_id=596676 M8779_RS00545 WP_003689924.1 103573..104157(-) (ruvA) [Neisseria gonorrhoeae strain AT159]

MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG

IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAASPAADETEDIVSTLLA

LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide

Download Length: 585 bp

                                >NTDB_id=596676 M8779_RS00545 WP_003689924.1 103573..104157(-) (ruvA) [Neisseria gonorrhoeae strain AT159]

ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA

AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC

GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC

ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT

CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG

CGCATACGGTAACGGACGGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG

CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT

TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(150-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q5F636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae R6	38	100	0.392
ruvA	Streptococcus pneumoniae D39	38	100	0.392
ruvA	Streptococcus pneumoniae TIGR4	37.5	100	0.387
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.951	100	0.371

Detailed information NTG0596676