Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   M8779_RS00410 Genome accession   NZ_CP097846
Coordinates   77547..78179 (-) Length   210 a.a.
NCBI ID   WP_269460797.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 72547..83179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS00365 (M8779_00365) pilE 72828..72971 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  M8779_RS00370 (M8779_00370) - 73436..73759 (-) 324 Protein_73 pilin -
  M8779_RS00375 (M8779_00375) - 73725..74177 (-) 453 Protein_74 pilin -
  M8779_RS00380 (M8779_00380) lpxC 74306..75229 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  M8779_RS00390 (M8779_00390) pilE 75896..76204 (-) 309 WP_269460796.1 pilin Machinery gene
  M8779_RS00395 (M8779_00395) - 76261..76611 (-) 351 Protein_77 pilin -
  M8779_RS00400 (M8779_00400) - 76652..77002 (-) 351 Protein_78 pilin -
  M8779_RS00405 (M8779_00405) - 77043..77429 (-) 387 Protein_79 pilin -
  M8779_RS00410 (M8779_00410) pilE 77547..78179 (-) 633 WP_269460797.1 pilin Machinery gene
  M8779_RS00415 (M8779_00415) - 78403..78528 (+) 126 Protein_81 IS110 family transposase -
  M8779_RS00420 (M8779_00420) - 78837..79213 (+) 377 Protein_82 transposase -
  M8779_RS00425 (M8779_00425) - 79412..80032 (+) 621 WP_003696151.1 fused MFS/spermidine synthase -
  M8779_RS00430 (M8779_00430) - 80055..81506 (+) 1452 WP_033909671.1 spermidine synthase -
  M8779_RS00435 (M8779_00435) - 81999..82355 (+) 357 WP_002216332.1 NADH-quinone oxidoreductase subunit A -
  M8779_RS00440 (M8779_00440) - 82346..82828 (+) 483 WP_002215610.1 NADH-quinone oxidoreductase subunit B -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22558.43 Da        Isoelectric Point: 9.1837

>NTDB_id=596675 M8779_RS00410 WP_269460797.1 77547..78179(-) (pilE) [Neisseria gonorrhoeae strain AT159]
MATVRLCRWVALPLPELRNGCLPWAGAGGGRAVCRYDTEVPIYKGGLQPAKSTNSAESTDSRRRHSRISGNDEAILLAEG
QKSAVTEYYLNHGEWPENNTSAGVASASKIIGKYVKEVKVEKGVVTATMASSNVNKEIQGKKLSLWAKRQDGSVKWFCGQ
PVTRDDKAGTVTDAAGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=596675 M8779_RS00410 WP_269460797.1 77547..78179(-) (pilE) [Neisseria gonorrhoeae strain AT159]
TTGGCAACTGTCCGGTTGTGCCGATGGGTTGCCCTGCCGCTCCCTGAGCTACGCAACGGTTGTCTGCCTTGGGCGGGCGC
GGGTGGCGGCCGGGCGGTTTGTCGCTATGATACGGAAGTTCCGATATACAAGGGCGGGCTTCAGCCCGCCAAATCCACCA
ACTCCGCCGAATCCACCGATTCCCGCCGCCGTCATTCCCGCATAAGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGT
CAAAAATCAGCCGTTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCGC
TTCAAAAATCATAGGCAAATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCACAATGGCTTCAAGCAACG
TAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAG
CCGGTTACGCGCGACGACAAAGCCGGCACCGTCACCGACGCCGCCGGCAACGACGGCAAAATCGACACCAAGCACCTGCC
GTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(73-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

78.4

59.524

0.467
  pilE Neisseria gonorrhoeae MS11

78.4

59.524

0.467