Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M9H69_RS09120 Genome accession   NZ_CP097843
Coordinates   1803061..1803654 (-) Length   197 a.a.
NCBI ID   WP_250315450.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798061..1808654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS09090 (M9H69_09090) - 1798737..1799681 (+) 945 WP_000815618.1 magnesium transporter CorA family protein -
  M9H69_RS09095 (M9H69_09095) - 1799693..1800370 (+) 678 WP_250315448.1 DUF1129 family protein -
  M9H69_RS09100 (M9H69_09100) - 1800386..1800733 (+) 348 WP_000331822.1 TfoX/Sxy family protein -
  M9H69_RS09105 (M9H69_09105) - 1801001..1802035 (+) 1035 WP_250316179.1 S66 peptidase family protein -
  M9H69_RS09110 (M9H69_09110) - 1802141..1802404 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  M9H69_RS09115 (M9H69_09115) - 1802488..1803051 (-) 564 WP_250315449.1 DNA-3-methyladenine glycosylase I -
  M9H69_RS09120 (M9H69_09120) ruvA 1803061..1803654 (-) 594 WP_250315450.1 Holliday junction branch migration protein RuvA Machinery gene
  M9H69_RS09125 (M9H69_09125) ribD 1804059..1805159 (+) 1101 WP_045617813.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  M9H69_RS09130 (M9H69_09130) ribE 1805144..1805779 (+) 636 WP_061588592.1 riboflavin synthase -
  M9H69_RS09135 (M9H69_09135) - 1805799..1807004 (+) 1206 WP_025169579.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  M9H69_RS09140 (M9H69_09140) ribE 1807005..1807472 (+) 468 WP_000860624.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21738.21 Da        Isoelectric Point: 6.2573

>NTDB_id=596652 M9H69_RS09120 WP_250315450.1 1803061..1803654(-) (ruvA) [Streptococcus oralis strain HP01]
MYEYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAVDDNAGLVQAIESKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=596652 M9H69_RS09120 WP_250315450.1 1803061..1803654(-) (ruvA) [Streptococcus oralis strain HP01]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATTACTGCTAAATACATTGTTCTTGAAACCAACGGTATCGGTTATAT
CCTGCATGTAGCTAATCCCTATGCTTACTCAGGTCAGGTCAATCAAGAAACTCAAATTTATGTGCACCAAGTTGTTCGAG
AGGATGCTCATCTGCTCTATGGTTTCCGCTCAGAAGATGAGAAGAAACTCTTTCTTAGTCTGATCTCGGTCTCAGGGATT
GGTCCGGTGTCAGCTCTTGCTATTATCGCTGTCGATGACAATGCTGGCTTGGTTCAAGCGATTGAGAGCAAGAACATCAC
CTACTTGACTAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTTGTGG
CTAGTGATGACCTTCCTGCTAAGGTGGCAGTGCAAGCAAGTGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCTATG
TTGGCGCTGGGCTACAAGGCAACCGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426