Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrB   Type   Machinery gene
Locus tag   M9H69_RS04970 Genome accession   NZ_CP097843
Coordinates   959139..961127 (+) Length   662 a.a.
NCBI ID   WP_250316097.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 954139..966127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS04955 (M9H69_04955) - 955031..955771 (-) 741 WP_007516801.1 amino acid ABC transporter ATP-binding protein -
  M9H69_RS04960 (M9H69_04960) - 955771..957936 (-) 2166 WP_250316095.1 ABC transporter substrate-binding protein/permease -
  M9H69_RS04965 (M9H69_04965) - 958109..959062 (+) 954 WP_250316096.1 CPBP family intramembrane glutamic endopeptidase -
  M9H69_RS04970 (M9H69_04970) uvrB 959139..961127 (+) 1989 WP_250316097.1 excinuclease ABC subunit UvrB Machinery gene
  M9H69_RS04975 (M9H69_04975) - 961819..962139 (+) 321 WP_250316171.1 hypothetical protein -
  M9H69_RS04980 (M9H69_04980) - 962159..962626 (+) 468 WP_250316098.1 8-oxo-dGTP diphosphatase -
  M9H69_RS04985 (M9H69_04985) - 962623..962736 (-) 114 Protein_933 3H domain-containing protein -
  M9H69_RS04990 (M9H69_04990) - 962793..963566 (+) 774 WP_250316099.1 class I SAM-dependent methyltransferase -
  M9H69_RS04995 (M9H69_04995) - 963682..963831 (+) 150 Protein_935 NUDIX hydrolase -
  M9H69_RS05000 (M9H69_05000) - 963828..964343 (-) 516 WP_250316100.1 transcription repressor NadR -
  M9H69_RS05005 (M9H69_05005) - 964355..964882 (-) 528 WP_000354636.1 ECF transporter S component -
  M9H69_RS05010 (M9H69_05010) - 965062..965625 (-) 564 WP_001042726.1 ECF transporter S component -

Sequence


Protein


Download         Length: 662 a.a.        Molecular weight: 75807.98 Da        Isoelectric Point: 4.6080

>NTDB_id=596599 M9H69_RS04970 WP_250316097.1 959139..961127(+) (uvrB) [Streptococcus oralis strain HP01]
MINRITDNKFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYG
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTETVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
MTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVTKEEDKEIDINSLNKQERKELVKKLEKQMQEAV
EVLDFELAAQIRDMMLEVKAMG

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=596599 M9H69_RS04970 WP_250316097.1 959139..961127(+) (uvrB) [Streptococcus oralis strain HP01]
ATGATCAATCGGATTACAGATAATAAATTTAAACTAGTATCAAAATACGAACCTTCAGGAGATCAACCCCAGGCAATTGA
GCAGTTGGTTGATAATATCGAGGGTGGAGAAAAGGCTCAGATTCTGATGGGGGCGACGGGTACAGGGAAGACCTATACCA
TGAGTCAAGTCATTTCCAAAGTCAATAAGCCAACTTTGGTCATTGCGCATAACAAAACCCTAGCTGGTCAGCTCTACGGA
GAGTTCAAGGAATTTTTCCCTGAAAATGCTGTTGAGTACTTTGTGTCTTATTATGATTATTACCAACCCGAGGCTTATGT
CCCTTCGAGCGATACCTATATTGAGAAGGATAGCTCTGTCAATGATGAGATTGACAAGCTCCGTCACTCAGCGACTTCGG
CTCTTCTGGAGCGTAACGATGTCATCGTCGTGGCTTCAGTCTCTTGTATCTATGGTTTGGGTTCGCCAAAGGAATACGCA
GATAGTGTCGTTAGTCTCCGTCCTGGTCTTGAGATTTCTCGTGATAAACTCTTGAATGACTTGGTTGATATCCAGTTTGA
ACGTAATGACATTGATTTCCAACGAGGAAGATTTCGCGTTCGCGGGGATGTGGTGGAGATTTTTCCAGCTTCCCGTGATG
AACACGCTTTTCGAGTAGAGTTCTTCGGAGATGAAATTGACCGTATCCGAGAAGTTGAGGCTCTGACTGGTCAGGTATTA
GGTGAAGTGGATCATCTGGCAATTTTCCCTGCGACTCACTTTGTGACCAATGACGACCACATGGAAGTTGCTATTGCCAA
GATTCAGGCTGAGTTGGAGGAGCAGTTAGCTGTCTTTGAAAAGGAAGGCAAACTGCTAGAGGCCCAGCGTTTGAAACAGC
GGACAGAGTATGATATTGAGATGTTACGTGAGATGGGTTATACAAATGGGGTTGAGAACTACTCACGCCACATGGATGGT
CGTAGTGAAGGGGAGCCTCCTTATACGCTTCTCGACTTCTTCCCAGATGATTTTTTGATCATGATTGATGAAAGCCACAT
GACCATGGGGCAGATCAAGGGCATGTACAATGGAGACCGTTCTCGTAAGGAAATGCTGGTAAATTATGGTTTCCGTTTGC
CATCAGCCTTGGACAATCGACCTCTTCGTCGTGAAGAGTTTGAAAGTCACGTTCATCAGATTGTTTACGTTTCAGCGACA
CCAGGTGATTATGAAAATGAACAGACCGAGACAGTGATTGAGCAAATCATTCGTCCAACAGGGCTTCTAGACCCAGAGGT
GGAAGTCCGTCCGACTATGGGACAGATTGATGACCTATTGGGTGAAATCAATGCCCGTGTTGAAAAGAATGAACGAACCT
TTATCACAACCTTGACCAAGAAGATGGCAGAAGACTTGACCGACTACTTCAAGGAAATGGGCATCAAGGTCAAGTATATG
CACTCGGACATCAAGACCTTGGAGCGGACGGAGATTATCCGTGACCTGCGCTTGGGTGTATTTGATGTCTTAGTCGGAAT
CAACCTGCTCCGCGAAGGGATTGACGTTCCTGAGGTAAGCTTGGTTGCCATTCTCGATGCTGATAAGGAAGGTTTCCTTC
GTAACGAACGTGGCCTCATCCAGACCATTGGTCGTGCTGCCCGTAATAGCGAAGGGCATGTGATTATGTATGCGGACACG
ATGACTCAGTCTATGCAACGCGCTATCGATGAAACGGCTCGCCGTCGGAAAATCCAGATGGCATATAATGAAGAACATGG
TATCGTACCTCAGACAATCAAGAAAGAAATCCGTGACCTGATTGCCGTAACCAAGGCAGTTACCAAGGAAGAGGACAAGG
AAATTGACATCAACAGCCTCAACAAGCAAGAGCGCAAAGAACTCGTCAAGAAACTGGAAAAACAAATGCAAGAAGCCGTC
GAAGTGCTTGACTTTGAACTGGCAGCTCAGATCCGTGATATGATGCTGGAAGTCAAGGCGATGGGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

98.941

99.849

0.988

  uvrB Streptococcus pneumoniae D39

98.941

99.849

0.988

  uvrB Streptococcus pneumoniae TIGR4

98.79

99.849

0.986