Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AW27_RS22640 Genome accession   NZ_CP097800
Coordinates   5153184..5154242 (+) Length   352 a.a.
NCBI ID   WP_037923922.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5148184..5159242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS22615 (AW27_022585) - 5148466..5149185 (-) 720 WP_078556672.1 CbiX/SirB N-terminal domain-containing protein -
  AW27_RS22620 (AW27_022590) - 5149645..5150259 (+) 615 WP_236647722.1 vancomycin high temperature exclusion protein -
  AW27_RS22625 (AW27_022595) - 5150334..5150528 (+) 195 WP_037923914.1 hypothetical protein -
  AW27_RS22630 (AW27_022600) - 5150597..5152678 (+) 2082 WP_037923916.1 molybdopterin oxidoreductase family protein -
  AW27_RS22635 (AW27_022605) - 5152808..5153032 (-) 225 WP_157840270.1 hypothetical protein -
  AW27_RS22640 (AW27_022610) rpoS 5153184..5154242 (+) 1059 WP_037923922.1 RNA polymerase sigma factor Regulator
  AW27_RS22645 (AW27_022615) rcrQ 5154332..5156254 (-) 1923 WP_037923925.1 ABC transporter ATP-binding protein Regulator
  AW27_RS22650 (AW27_022620) rcrP 5156251..5157984 (-) 1734 WP_037923928.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39394.89 Da        Isoelectric Point: 4.9775

>NTDB_id=596537 AW27_RS22640 WP_037923922.1 5153184..5154242(+) (rpoS) [Streptomyces sp. PCS3-D2 isolate P1]
MQTRTLTVNASESSEAEAVDEEPEVLELIEPAPVPVQRSRDGDGGGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARR
VEAGLFAEEKLGSTPDLDSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFD
YARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRL
AQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIF
GVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=596537 AW27_RS22640 WP_037923922.1 5153184..5154242(+) (rpoS) [Streptomyces sp. PCS3-D2 isolate P1]
GTGCAGACCCGGACCCTGACCGTGAACGCGAGCGAGTCCTCGGAGGCCGAAGCCGTGGACGAAGAGCCCGAGGTACTGGA
GCTGATCGAGCCGGCGCCGGTGCCGGTACAGCGCAGCCGGGACGGCGACGGGGGCGGGGGTGGGGCGGGACCTTCCGCAG
ACCTCTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTGGCGCGGCGC
GTCGAAGCCGGACTGTTCGCCGAGGAGAAGCTCGGCAGCACCCCCGACCTCGACTCCCAACTCGCCGTCGACCTCGACCG
GCTCGTCGTCATGGGGCGCATGGCCAAACGCCGCCTCATCGAGTCGAACCTGAGGCTGGTCGTCTCCGTAGCCAAGCGGT
ACGTGGGCCGCGGGCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTCGAGAAGTTCGAC
TACGCCCGCGGGTACAAGTTCTCGACCTATGCGACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGC
CCGGACCATCCGGGTCCCCGTCCACGTCGTCGAGCTGATCAACCGCGTCGTCCGCGTCCAGCGCCGCATGCTCCAGGAAC
GCGGCTACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTGGAGCTGACCCCGGAGCGGGTCCTGGAAGTACTGCGCCTC
GCCCAGGAGCCCGTCTCCCTGCACGCACCCGTTGGCGAGGAGGAGGACGTCGCGCTCGGCGATCTCATCGAGGACGGGGA
CGCCGCCTCCCCCGTGGAGTCGGCCGCCTTCTTCCTGCTGCGCGAACACCTGGAGGCGGTCCTGTCGACCCTCGGCGAAC
GCGAGCGCAAGGTCGTGCAGTTGCGGTACGGGCTTGCCGACGGACGGCCGCGCACCCTGGAGGAGATCGGCCGGATCTTC
GGCGTGACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCT
CCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(54-87)

Sigma-70, region 4 (Sigma70_r4)

(287-339)

Sigma-70 region 3 (Sigma70_r3)

(198-274)

Sigma-70 region 2 (Sigma70_r2)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

83.239

0.366