Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AW27_RS22645 Genome accession   NZ_CP097800
Coordinates   5154332..5156254 (-) Length   640 a.a.
NCBI ID   WP_037923925.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5149332..5161254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS22620 (AW27_022590) - 5149645..5150259 (+) 615 WP_236647722.1 vancomycin high temperature exclusion protein -
  AW27_RS22625 (AW27_022595) - 5150334..5150528 (+) 195 WP_037923914.1 hypothetical protein -
  AW27_RS22630 (AW27_022600) - 5150597..5152678 (+) 2082 WP_037923916.1 molybdopterin oxidoreductase family protein -
  AW27_RS22635 (AW27_022605) - 5152808..5153032 (-) 225 WP_157840270.1 hypothetical protein -
  AW27_RS22640 (AW27_022610) rpoS 5153184..5154242 (+) 1059 WP_037923922.1 RNA polymerase sigma factor Regulator
  AW27_RS22645 (AW27_022615) rcrQ 5154332..5156254 (-) 1923 WP_037923925.1 ABC transporter ATP-binding protein Regulator
  AW27_RS22650 (AW27_022620) rcrP 5156251..5157984 (-) 1734 WP_037923928.1 ABC transporter ATP-binding protein Regulator
  AW27_RS22655 (AW27_022625) - 5158147..5159595 (-) 1449 WP_037923931.1 FGGY family carbohydrate kinase -
  AW27_RS22660 (AW27_022630) - 5159692..5159997 (-) 306 WP_037923934.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68778.23 Da        Isoelectric Point: 5.2881

>NTDB_id=596538 AW27_RS22645 WP_037923925.1 5154332..5156254(-) (rcrQ) [Streptomyces sp. PCS3-D2 isolate P1]
MSGPGGRMMMGPAQRSLDFKGSGKRLLGQLAQDRAKLWGMVLAVVGSVACAVVGPKILGEATDLVFAGIVGREMPAGLTK
QQALDGMRAQGDGGMADMLSGTDFTPGRGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTLYRLREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVAVGTVPVSVYVAAKIGKKS
QPQFVEQWKTTGALNAHIEEMYSGHNLVKVFGRQKESAAVFAEQNDALFRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQERDADVPERPQELRGQVTFDKV
AFRYEPDRPLIENLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRAGIGMVLQDTWL
FGGTIAENIAYGASRQVARAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=596538 AW27_RS22645 WP_037923925.1 5154332..5156254(-) (rcrQ) [Streptomyces sp. PCS3-D2 isolate P1]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCCTGGATTTCAAGGGATCGGGCAAACGGCTGCT
GGGCCAGCTCGCACAGGACCGGGCGAAGCTGTGGGGCATGGTCCTGGCCGTTGTCGGCAGCGTCGCCTGCGCGGTCGTCG
GACCGAAGATCCTCGGCGAGGCGACCGACCTGGTCTTCGCGGGGATCGTCGGCCGGGAGATGCCGGCCGGCCTGACCAAG
CAGCAGGCGCTGGACGGGATGCGCGCCCAGGGCGACGGCGGCATGGCGGACATGCTCTCCGGCACCGACTTCACCCCGGG
CCGGGGCATCGACTTCGGTGCCGTCGGGGTCGTGGCGATCTGGGCTCTGGTGGTCTTCACCCTGGCCGGGCTGCTGATGC
TGGTGGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCCTGTACCGGCTGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
CCAGACGCTGCAGCAGACGATGGGGCAGCTGCTGAACTCGCTGCTGACCATCGTCGGTGTGCTCGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCCGTGGGAACCGTACCGGTCTCGGTGTACGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGAACAGTGGAAGACGACCGGTGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGTCGGCAGAAGGAGTCCGCGGCGGTCTTCGCCGAGCAGAACGACGCACTGTTCCGGGCCTCGTTCA
AGGCTCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATCGCGGTGGTC
GGCGGGCTGCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTCACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCCCCGGAGCAGGAGCGCGACGCCGACGTGCCGGAACGCCCGCAGGAGCTGCGCGGACAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACCGGCCGCTGATCGAGAACCTCTCGCTGGCGGTGGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGGGCCGGGAAGACCACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCGAGATCGCGC
TGGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAACTGCGCGCGGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCTTCGCGCCAGGTCGCGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCGGCGCACGCGGACCGGTTCATCCGGACCCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGTGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTCCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACGGAAGTACTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACCATCCGCGACGCCGACCTGATCCTGGTGATGGAGAGCGGATCGATCGTCGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCCGGCGGTGCCTACGCCCGCCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.354

97.188

0.392