Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AW27_RS22650 Genome accession   NZ_CP097800
Coordinates   5156251..5157984 (-) Length   577 a.a.
NCBI ID   WP_037923928.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5151251..5162984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS22635 (AW27_022605) - 5152808..5153032 (-) 225 WP_157840270.1 hypothetical protein -
  AW27_RS22640 (AW27_022610) rpoS 5153184..5154242 (+) 1059 WP_037923922.1 RNA polymerase sigma factor Regulator
  AW27_RS22645 (AW27_022615) rcrQ 5154332..5156254 (-) 1923 WP_037923925.1 ABC transporter ATP-binding protein Regulator
  AW27_RS22650 (AW27_022620) rcrP 5156251..5157984 (-) 1734 WP_037923928.1 ABC transporter ATP-binding protein Regulator
  AW27_RS22655 (AW27_022625) - 5158147..5159595 (-) 1449 WP_037923931.1 FGGY family carbohydrate kinase -
  AW27_RS22660 (AW27_022630) - 5159692..5159997 (-) 306 WP_037923934.1 hypothetical protein -
  AW27_RS22680 (AW27_022650) - 5161118..5161315 (+) 198 WP_037923936.1 hypothetical protein -
  AW27_RS22685 (AW27_022655) - 5161383..5161811 (+) 429 WP_063890612.1 hypothetical protein -
  AW27_RS22690 (AW27_022660) - 5162210..5162563 (+) 354 WP_172671353.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62315.27 Da        Isoelectric Point: 5.0682

>NTDB_id=596539 AW27_RS22650 WP_037923928.1 5156251..5157984(-) (rcrP) [Streptomyces sp. PCS3-D2 isolate P1]
MLIRLLRTHLGPYRKPIAALVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAVGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVFRTRPLFRRMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVRALGRSGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVTALEGGLEAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVATIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=596539 AW27_RS22650 WP_037923928.1 5156251..5157984(-) (rcrP) [Streptomyces sp. PCS3-D2 isolate P1]
GTGCTCATACGACTTCTGCGGACCCACCTGGGTCCGTACCGGAAACCCATCGCGGCGCTGGTCCTGCTGCAACTGCTGCA
GACCAGTGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCGCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGTGCC
CGCACGGCGGCGGCCGTCGGCCGCGACGTCCGGGCCTCGGTCTTCGACCGGGTGCAGAGCTTCTCCGCACGGGAGCTCGG
CCAGTTCGGCGCCCCGTCCCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTGAAACTGTCGGGCGTC
CTGCTGGCCGTGGTGCCCGTGCTCGGGATCTCGGTCGGTGCCATCGTCTTCCGGACGCGGCCGCTGTTCCGCCGGATGCA
GGAGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTCACCGGCGTCTCCCTGGCCGCGGGCAAGCTGCTGGCCCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTGATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTCGTCCCA
CCCGCCGACCCGGTGCGCGCACTCGGCCGCAGCGGGCTCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCACCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACCCTGCTCGGCCTGGTTCCGCGGCTGTTCGACGCGACCGGCGGAGAGGTGCTGGTCGACGGCGAGGACGTGCGC
CGCCTCGACCCCGAACTCCTGGCGAAGACGGTCGGCATGGTCCCGCAGAAGCCCTACCTGTTCTCCGGCACCATCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGCGACGAGGAGCTGTGGCAGGCCCTGGAAGTGGCCCAGGCCAAGGAGTTCG
TCACGGCGCTGGAGGGCGGCCTCGAGGCCCCGGTCGCCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACACTCGTACAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCGCGACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGGCAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.45

93.241

0.386