Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A237_RS08675 Genome accession   NZ_CP081457
Coordinates   1894891..1897107 (+) Length   738 a.a.
NCBI ID   WP_017699973.1    Uniprot ID   A0A3M4KKF1
Organism   Pseudomonas syringae pv. actinidifoliorum ICMP 18803     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1889891..1902107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A237_RS08665 (A237_008635) - 1891778..1892629 (-) 852 WP_017699975.1 DUF4123 domain-containing protein -
  A237_RS08670 (A237_008640) tssI 1892626..1894653 (-) 2028 WP_017699974.1 type VI secretion system tip protein VgrG -
  A237_RS08675 (A237_008645) comA 1894891..1897107 (+) 2217 WP_017699973.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A237_RS08680 (A237_008650) exbB 1897189..1897866 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A237_RS08685 (A237_008655) - 1897863..1898294 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  A237_RS08690 (A237_008660) lpxK 1898294..1899289 (+) 996 WP_017699972.1 tetraacyldisaccharide 4'-kinase -
  A237_RS08695 (A237_008665) - 1899307..1899492 (+) 186 WP_003381112.1 Trm112 family protein -
  A237_RS08700 (A237_008670) kdsB 1899489..1900253 (+) 765 WP_005619733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A237_RS08705 (A237_008675) murB 1900288..1901307 (+) 1020 WP_017699971.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80737.03 Da        Isoelectric Point: 10.5933

>NTDB_id=596450 A237_RS08675 WP_017699973.1 1894891..1897107(+) (comA) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLSVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRRLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRARWLQAPHHGSRSSSSKVFLQAVAPVGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=596450 A237_RS08675 WP_017699973.1 1894891..1897107(+) (comA) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTGCCGCCGACCTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCACTGTTTCTGCTCGGCTTCACGT
GGGCGTGTGTTTCGGCGCAGTGGGCGTTGAATGACCGTTTGCAGCAACGGCTGGACGGCCAGACGCTGTGGCTGCAAGGC
AAAGTGGTCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTTCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGTT
GCCTGCGCTGATTCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGTTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGTTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGTCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTAC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCACGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGCGCGCTGGCGTTTATCGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCTATCGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTTGCGGGGGGCGCGCTGGAGTGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCGTGGCTGTTGAGTC
TGCTCGGTGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGTTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCCGTGCCGATGGGGCAGGTCGAGGTGTTGCAATTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGTTGCTCTACGACGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGTCGCTTGGACCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCGTTTCCGGTGAACCGAGTGCTGGGCGGGGAGCTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCTGGCGGCGAGCGTCTGCTGCTGACGGGCGACATCGATGTGCACGCCGAA
CGCGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCGCTGGTTACAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCAGTTGCGCCGGTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CATTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCTGAACTCGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4KKF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.827

97.019

0.619
  comA Ralstonia pseudosolanacearum GMI1000

32.381

100

0.369