Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A237_RS08680 Genome accession   NZ_CP081457
Coordinates   1897189..1897866 (+) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidifoliorum ICMP 18803     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892189..1902866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A237_RS08670 (A237_008640) tssI 1892626..1894653 (-) 2028 WP_017699974.1 type VI secretion system tip protein VgrG -
  A237_RS08675 (A237_008645) comA 1894891..1897107 (+) 2217 WP_017699973.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A237_RS08680 (A237_008650) exbB 1897189..1897866 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A237_RS08685 (A237_008655) - 1897863..1898294 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  A237_RS08690 (A237_008660) lpxK 1898294..1899289 (+) 996 WP_017699972.1 tetraacyldisaccharide 4'-kinase -
  A237_RS08695 (A237_008665) - 1899307..1899492 (+) 186 WP_003381112.1 Trm112 family protein -
  A237_RS08700 (A237_008670) kdsB 1899489..1900253 (+) 765 WP_005619733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A237_RS08705 (A237_008675) murB 1900288..1901307 (+) 1020 WP_017699971.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=596451 A237_RS08680 WP_003381119.1 1897189..1897866(+) (exbB) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=596451 A237_RS08680 WP_003381119.1 1897189..1897866(+) (exbB) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTCGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCT
GAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCG
TCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGTGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738