Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A237_RS03965 Genome accession   NZ_CP081457
Coordinates   848066..849406 (-) Length   446 a.a.
NCBI ID   WP_017700326.1    Uniprot ID   A0A3M4K8Q5
Organism   Pseudomonas syringae pv. actinidifoliorum ICMP 18803     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 843066..854406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A237_RS03955 (A237_003935) - 845795..846910 (-) 1116 WP_017700324.1 efflux RND transporter periplasmic adaptor subunit -
  A237_RS03960 (A237_003940) - 846992..847609 (-) 618 WP_017700325.1 TetR/AcrR family transcriptional regulator -
  A237_RS03965 (A237_003945) pilR 848066..849406 (-) 1341 WP_017700326.1 sigma-54 dependent transcriptional regulator Regulator
  A237_RS03970 (A237_003950) pilS 849409..851004 (-) 1596 WP_017700327.1 PAS domain-containing sensor histidine kinase Regulator
  A237_RS03975 (A237_003955) - 850994..851233 (-) 240 WP_259643074.1 PP0621 family protein -
  A237_RS03980 (A237_003960) - 851363..852385 (-) 1023 WP_003381267.1 outer membrane protein assembly factor BamD -
  A237_RS03985 (A237_003965) rluD 852535..853497 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A237_RS03990 (A237_003970) pgeF 853494..854222 (+) 729 WP_017700329.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50041.15 Da        Isoelectric Point: 6.8233

>NTDB_id=596440 A237_RS03965 WP_017700326.1 848066..849406(-) (pilR) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHSYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNSTQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=596440 A237_RS03965 WP_017700326.1 848066..849406(-) (pilR) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTCGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACAGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTGCGCAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCTTGCGTAACCAGATCGGCAAACTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCCTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCTCACGAAGACAAGCCGGGCCTATTCCAGGCGGCGCACAACGGGACGCTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAAGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGCGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGGCGACTTGCAGGCAACAGCACTCAGCCCGTTGCGCGTTTGCATGCGCAGGCCCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCTCAAGCGCAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCTGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTAAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4K8Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.327

0.776
  pilR Acinetobacter baumannii strain A118

48.478

100

0.5