Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   A237_RS03970 Genome accession   NZ_CP081457
Coordinates   849409..851004 (-) Length   531 a.a.
NCBI ID   WP_017700327.1    Uniprot ID   A0A3M4K890
Organism   Pseudomonas syringae pv. actinidifoliorum ICMP 18803     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 844409..856004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A237_RS03955 (A237_003935) - 845795..846910 (-) 1116 WP_017700324.1 efflux RND transporter periplasmic adaptor subunit -
  A237_RS03960 (A237_003940) - 846992..847609 (-) 618 WP_017700325.1 TetR/AcrR family transcriptional regulator -
  A237_RS03965 (A237_003945) pilR 848066..849406 (-) 1341 WP_017700326.1 sigma-54 dependent transcriptional regulator Regulator
  A237_RS03970 (A237_003950) pilS 849409..851004 (-) 1596 WP_017700327.1 PAS domain-containing sensor histidine kinase Regulator
  A237_RS03975 (A237_003955) - 850994..851233 (-) 240 WP_259643074.1 PP0621 family protein -
  A237_RS03980 (A237_003960) - 851363..852385 (-) 1023 WP_003381267.1 outer membrane protein assembly factor BamD -
  A237_RS03985 (A237_003965) rluD 852535..853497 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A237_RS03990 (A237_003970) pgeF 853494..854222 (+) 729 WP_017700329.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58287.19 Da        Isoelectric Point: 6.7758

>NTDB_id=596441 A237_RS03970 WP_017700327.1 849409..851004(-) (pilS) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
MTADTPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAATD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSSRSHPSAQVWLKLQPDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYLPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=596441 A237_RS03970 WP_017700327.1 849409..851004(-) (pilS) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
GTGACCGCTGATACGCCTTCGCTTACCAGCCCGCAGGCACAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGTCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAACGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACTGACGCAATCATGCTTTCCGCGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCGTCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGTATTGGCCTGTTGATCGCCGCCGTTTCTGCCATTG
GCATTATCTACCTGACGTTCTATATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCGCTGTGCTTCGCCGCCGCGCTGCTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGGGCTTTGACGCTGCTGGGCCACGAACGACTGGTCGGCCAAGTCATCGAC
GCTTACTCGCCGCAGTTGGTAGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACTTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATTTTCCTTGAGG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGTAATCCGCTGGGTGCGGTCAGCCACGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGACCGCCG
TCTGGGGCAGATTATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAACTGTCTCGCAGACGCG
AAGCACAGCCGGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGCAGCTCGGCAGCTACGGAT
CAGTCGATTCATGTGCAAATCAGCCCCGGCATGCTGACCACTCGCATGGACGCCGGTCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCTTACGTTACAGCAGCCGCAGTCACCCGTCGGCGCAAGTCTGGCTCAAGCTGCAGCCAGACCGGG
AAAGCGATTTACCGATTCTGGAAGTCCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTGTACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATACCTCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4K890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62