Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K4L72_RS12685 Genome accession   NZ_CP081304
Coordinates   2613468..2613803 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CL-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2608468..2618803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4L72_RS12665 (K4L72_12665) gcvT 2609079..2610179 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  K4L72_RS12670 (K4L72_12670) - 2610602..2612272 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  K4L72_RS12675 (K4L72_12675) - 2612290..2613084 (+) 795 WP_014305407.1 YqhG family protein -
  K4L72_RS12680 (K4L72_12680) sinI 2613261..2613434 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  K4L72_RS12685 (K4L72_12685) sinR 2613468..2613803 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  K4L72_RS12690 (K4L72_12690) tasA 2613851..2614636 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  K4L72_RS12695 (K4L72_12695) sipW 2614700..2615284 (-) 585 WP_003153100.1 signal peptidase I SipW -
  K4L72_RS12700 (K4L72_12700) tapA 2615256..2615927 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  K4L72_RS12705 (K4L72_12705) - 2616186..2616515 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  K4L72_RS12710 (K4L72_12710) - 2616555..2616734 (-) 180 WP_003153093.1 YqzE family protein -
  K4L72_RS12715 (K4L72_12715) comGG 2616791..2617168 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  K4L72_RS12720 (K4L72_12720) comGF 2617169..2617669 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  K4L72_RS12725 (K4L72_12725) comGE 2617578..2617892 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  K4L72_RS12730 (K4L72_12730) comGD 2617876..2618313 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  K4L72_RS12735 (K4L72_12735) comGC 2618303..2618611 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=595906 K4L72_RS12685 WP_003153104.1 2613468..2613803(+) (sinR) [Bacillus velezensis strain CL-4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=595906 K4L72_RS12685 WP_003153104.1 2613468..2613803(+) (sinR) [Bacillus velezensis strain CL-4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991