Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   M8341_RS14225 Genome accession   NZ_CP097709
Coordinates   2919773..2921749 (+) Length   658 a.a.
NCBI ID   WP_034007101.1    Uniprot ID   A0ABW8QMZ3
Organism   Pseudomonas aeruginosa strain PA-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2914773..2926749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8341_RS14205 (M8341_14200) - 2916442..2917125 (-) 684 WP_226021040.1 LysR family transcriptional regulator substrate-binding protein -
  M8341_RS14210 (M8341_14205) - 2917144..2918160 (-) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  M8341_RS14215 (M8341_14210) - 2918172..2918486 (-) 315 WP_226021021.1 LysR family transcriptional regulator -
  M8341_RS14220 (M8341_14215) - 2918967..2919398 (+) 432 WP_034007103.1 DUF488 family protein -
  M8341_RS14225 (M8341_14220) uvrB 2919773..2921749 (+) 1977 WP_034007101.1 excinuclease ABC subunit UvrB Machinery gene
  M8341_RS14230 (M8341_14225) - 2921900..2922805 (-) 906 WP_073653350.1 LysR family transcriptional regulator -
  M8341_RS14235 (M8341_14230) - 2922960..2923367 (+) 408 WP_073653351.1 ketosteroid isomerase-related protein -
  M8341_RS14240 (M8341_14235) - 2923369..2923977 (+) 609 WP_073653352.1 GNAT family acetyltransferase -
  M8341_RS14245 (M8341_14240) - 2923974..2924864 (+) 891 WP_073653353.1 carbon-nitrogen hydrolase family protein -
  M8341_RS14250 (M8341_14245) frmR 2925147..2925422 (+) 276 WP_023093413.1 formaldehyde-responsive transcriptional repressor FrmR -
  M8341_RS14255 (M8341_14250) - 2925482..2926591 (+) 1110 WP_011871467.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74380.57 Da        Isoelectric Point: 5.1698

>NTDB_id=595804 M8341_RS14225 WP_034007101.1 2919773..2921749(+) (uvrB) [Pseudomonas aeruginosa strain PA-1]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRVQGDVIDIFPADSEYRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSDRDAA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLIDYGFRLPSSKNNRPLNFDEFEKVKPQTIFVSATPGDY
ELRVSKGRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=595804 M8341_RS14225 WP_034007101.1 2919773..2921749(+) (uvrB) [Pseudomonas aeruginosa strain PA-1]
ATGTCAACCGGTATGTTTATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTGTC
GGACATAGAAGAAGGTGCGACGCACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCTACGTTGATCTTGGCTCCTAACAAGACGTTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAACGCGGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAAATCTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGCCTGTCCACGACCAAATCCTTGATTGAGC
GTCGTGACGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGATCCAGATGCGTACCGAGCGCTACAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTAATTCGTCGCTTGGCTTTGCTGCAATATGATCGCACTGAGCG
CACTCTCAAGCGTGCAACATTCCGCGTCCAAGGTGATGTGATCGATATTTTCCCCGCTGATTCCGAGTACAGGGCAGTTC
GGGTGGAGCTGCTGGATGACACTGTTGCGTCTGTCCAATGGATGGACCCTGTTACCGGCAAGACGTTGGGAGAGATAGAT
CATTATTTGGTTTCGCCAAAAACGCTTTTCGCACCGCCCACGAACAAAATAGATTCCGCATCCAAAAAGATACTCGCTGA
TATGGAAGAGCGGGTTGCCGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGGCTGTACGAGCGGATCACGCATG
ACGTGGAAATGATGCGCGAGGTCGGCTATTGCTCGGGGATGGAGAATTATTCCTGCTACTTCAGCGACCGAGACGCAGCT
TCTCCTCCGATCACGTTGCTGGATTATTTGCCGAAAGACGGGCTGCTGTTCGTCGATGAATCTCATGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGACACGCTGATCGATTACGGGTTCCGTTTGCCTTCATCGAAGA
ACAACCGGCCATTGAACTTTGACGAGTTCGAGAAGGTCAAGCCTCAGACCATCTTTGTTTCCGCTACTCCGGGCGACTAC
GAGCTGAGGGTGTCGAAAGGCAGGGTTGTCGAACAGGTTATCAGGCCAACGGGACTGCTTGACCCCAAGGTTGAAGTGCG
GAAAGCGGATGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAGAAAGAATCGAGTGCTTGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAACGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCCATTCTCGATGCAGATCGTGCAGGGTTCTTGCGTTCGGCCC
ATGCGCTCATTCAGATGATCGGTCGAGTCGCTCGAAATGAAAACGGCAAGGCGATCTTGTACGCCGACGCGGTGACGCCG
GCGATGAAGCAGGCGATCGATGAGACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
AGCCTCGTCTGTGCGAAAACTAGCAGGAGAAGAGACGAATACGGAGGAGCCCACCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACCGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGACATTCGTCGTCAGTTGGATGGGTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(160-250)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae R6

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae D39

52.462

89.514

0.47