Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   M8286_RS07340 Genome accession   NZ_CP097577
Coordinates   1511199..1511849 (-) Length   216 a.a.
NCBI ID   WP_015647211.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506199..1516849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS07325 (M8286_07440) - 1507750..1508658 (+) 909 WP_029186525.1 neutral zinc metallopeptidase -
  M8286_RS07330 (M8286_07445) - 1508867..1509418 (-) 552 WP_275600786.1 isoprenylcysteine carboxyl methyltransferase family protein -
  M8286_RS07335 (M8286_10245) - 1509809..1511197 (-) 1389 WP_358636143.1 HAMP domain-containing sensor histidine kinase -
  M8286_RS07340 (M8286_07460) scnR 1511199..1511849 (-) 651 WP_015647211.1 response regulator transcription factor Regulator
  M8286_RS07345 (M8286_07465) - 1512103..1512804 (+) 702 WP_275600789.1 CPBP family glutamic-type intramembrane protease -
  M8286_RS07350 (M8286_07470) - 1513419..1516187 (-) 2769 WP_275600790.1 serum opacification factor -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24654.79 Da        Isoelectric Point: 4.8839

>NTDB_id=595735 M8286_RS07340 WP_015647211.1 1511199..1511849(-) (scnR) [Streptococcus suis strain 3112]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=595735 M8286_RS07340 WP_015647211.1 1511199..1511849(-) (scnR) [Streptococcus suis strain 3112]
ATGTCAAGGATATTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGAAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.767

100

0.407
  micA Streptococcus pneumoniae Cp1015

38.667

100

0.403
  vicR Streptococcus mutans UA159

37.168

100

0.389