Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   M9A05_RS08205 Genome accession   NZ_CP097575
Coordinates   1789518..1790189 (-) Length   223 a.a.
NCBI ID   WP_250177692.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784518..1795189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS08180 (M9A05_08180) - 1785291..1785743 (-) 453 WP_023115538.1 protein YgfX -
  M9A05_RS08185 (M9A05_08185) - 1785727..1785981 (-) 255 WP_003085532.1 succinate dehydrogenase assembly factor 2 -
  M9A05_RS08190 (M9A05_08190) - 1786254..1787198 (+) 945 WP_003101947.1 folate-binding protein YgfZ -
  M9A05_RS08195 (M9A05_08195) - 1787299..1788135 (+) 837 WP_003085528.1 HDOD domain-containing protein -
  M9A05_RS08200 (M9A05_08200) - 1788143..1789525 (-) 1383 WP_003101943.1 sensor histidine kinase -
  M9A05_RS08205 (M9A05_08205) ciaR 1789518..1790189 (-) 672 WP_250177692.1 response regulator Regulator
  M9A05_RS08210 (M9A05_08210) - 1790400..1791683 (+) 1284 WP_003114177.1 OprD family porin -
  M9A05_RS08215 (M9A05_08215) - 1791713..1792696 (+) 984 WP_003085519.1 tripartite tricarboxylate transporter substrate binding protein -
  M9A05_RS08220 (M9A05_08220) - 1792745..1793215 (+) 471 WP_003101933.1 tripartite tricarboxylate transporter TctB family protein -
  M9A05_RS08225 (M9A05_08225) - 1793226..1794743 (+) 1518 WP_003116509.1 tripartite tricarboxylate transporter permease -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24445.27 Da        Isoelectric Point: 5.1881

>NTDB_id=595580 M9A05_RS08205 WP_250177692.1 1789518..1790189(-) (ciaR) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFEVLARLRGRGKTLPVLMLTA
RGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEA
MIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGAAVRIVTFRGLGYLLEAQGD

Nucleotide


Download         Length: 672 bp        

>NTDB_id=595580 M9A05_RS08205 WP_250177692.1 1789518..1790189(-) (ciaR) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCCGGCTGGACGGT
AGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCTCTGGCCAGCGAGGAGTACGCCCTGGCGATCCTCGACGTCGGCC
TGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACCCTGCCGGTGCTGATGCTGACTGCG
CGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGACGACTACCTGGCAAAGCCTTTCGAACTGTCCGA
GCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTGCTCGGTGGCGAACAGTTGCAGCGCTGCGGCGCCCTGGTCT
ACGACCTCGGCACCCGGCGCTTCAGCCTCGACGAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCG
ATGATCGCCCGTCCGGGGCGGGTGATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGC
CGACGCCATCGAGATCTACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGCCGCCGTGCGCATCGTCACCTTCCGCGGCC
TCGGCTACCTGCTGGAGGCGCAGGGTGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.668

100

0.377
  ciaR Streptococcus pneumoniae D39

37.668

100

0.377
  ciaR Streptococcus pneumoniae R6

37.668

100

0.377
  ciaR Streptococcus pneumoniae TIGR4

37.668

100

0.377
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.668

100

0.377