Detailed information NTG0595485

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: K3369_RS08865
• Genome accession: NZ_CP081178
• Coordinates: 1959918..1962152 (+)
• Length: 744 a.a.
• NCBI ID: WP_221108730.1
• Uniprot ID: -
• Organism: Pseudomonas mandelii strain KGI_MA19
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1954918..1967152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3369_RS08840 (K3369_08840)	-	1955954..1956613 (+)	660	WP_221108725.1	transglutaminase family protein	-
K3369_RS08845 (K3369_08845)	-	1956657..1957280 (+)	624	WP_221108726.1	glutathione S-transferase family protein	-
K3369_RS08850 (K3369_08850)	-	1957414..1958346 (+)	933	WP_010461902.1	ABC transporter ATP-binding protein	-
K3369_RS08855 (K3369_08855)	-	1958343..1959122 (+)	780	WP_010461900.1	ABC transporter permease	-
K3369_RS08860 (K3369_08860)	-	1959264..1959782 (-)	519	WP_221108728.1	DUF2062 domain-containing protein	-
K3369_RS08865 (K3369_08865)	comA	1959918..1962152 (+)	2235	WP_221108730.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
K3369_RS08870 (K3369_08870)	exbB	1962251..1962886 (+)	636	WP_010461893.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
K3369_RS08875 (K3369_08875)	-	1962883..1963314 (+)	432	WP_010461891.1	biopolymer transporter ExbD	-
K3369_RS08880 (K3369_08880)	lpxK	1963314..1964324 (+)	1011	WP_221108732.1	tetraacyldisaccharide 4'-kinase	-
K3369_RS08885 (K3369_08885)	-	1964350..1964535 (+)	186	WP_010461887.1	Trm112 family protein	-
K3369_RS08890 (K3369_08890)	kdsB	1964532..1965296 (+)	765	WP_077748004.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
K3369_RS08895 (K3369_08895)	-	1965296..1965760 (+)	465	WP_010461884.1	low molecular weight protein-tyrosine-phosphatase	-
K3369_RS08900 (K3369_08900)	murB	1965757..1966776 (+)	1020	WP_077748002.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81579.94 Da
• Isoelectric Point: 10.3548

>NTDB_id=595485 K3369_RS08865 WP_221108730.1 1959918..1962152(+) (comA) [Pseudomonas mandelii strain KGI_MA19]
MRTGMMALALGLLALRFLPVLPPVWLWMLLPVVGLMRLPFRTHPLAFFLFGFSWACASAQWALDDRLSLKLDGETRWVEG
RVTGLPQNAEGVVRFELTDSQSRSTRLPRHLRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGHRLVAAQWAWRDSIRQQLQAVDAQGRTGALIALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLILGLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLVDLLFKGLALMAGRFPAWVPVAVPVWIWALGTLGAFLLLLPKGVPLRPLGWPLLLLLV
FPPRPMLAEGVAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGEFDLGERVVLPSLRKLGVSGIDLMLLSHADADHAGGA
RAIANGLPVARVLSGDPEALPAELRAEGCESGRQWTWDGVDFRLWQWTSAADSNQKSCVLQIEASGERLLLTGDIDAAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLAALQPKAVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSATHGAIRLQL
GRFKPPWTMRLDRRFWRDPPPLGP

Nucleotide

• Length: 2235 bp

>NTDB_id=595485 K3369_RS08865 WP_221108730.1 1959918..1962152(+) (comA) [Pseudomonas mandelii strain KGI_MA19]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGTTTTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTCGTGGGTTTGATGCGGTTGCCGTTTCGTACTCACCCGTTGGCGTTTTTTCTGTTCGGCTTCAGTT
GGGCGTGCGCGAGTGCGCAGTGGGCGCTGGATGATCGCCTGTCGCTGAAGCTTGATGGCGAGACTCGTTGGGTCGAAGGT
CGGGTGACGGGCCTGCCGCAGAATGCCGAAGGGGTGGTGCGCTTCGAGTTGACCGACAGTCAGTCCCGAAGCACCCGGCT
GCCCCGGCATCTGCGCCTCGCCTGGTATGACGGACCGCCCGTCAACAGCGGCGAACGGTGGCGGCTGGCGGTCAAGTTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCCTTTGACTACGACGCCTGGTTGCTGGCACAACGCATCGGCGCTACCGGT
ACGGTCAAGGATGGCCATAGGCTGGTCGCCGCCCAATGGGCCTGGCGTGACAGCATTCGGCAGCAATTGCAGGCCGTCGA
TGCCCAAGGCCGGACGGGGGCGCTGATCGCATTGGTGTTGGGCGACGGCGGCGGGCTGAGTCGCGAGGACTGGCAAGTGC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGGTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGTCTGTGGCCGAGCCGTTTGCCCTGGCTGCCATGGGCCTGCGGACTGGCGTTTGCCGC
TGCGCTGGGTTACGGGTTGCTGGCCGGTTTTGAGGTGCCGGTGCGCCGGGCCTGCGTGATGATCGGTCTGGTGTTGTTGT
GGCGGCTAAGGTTTCGGCACCTTGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGCGTTTTACTGCTCGACCCGCTG
GCGAGCCTGCAACCGGGGTTCTGGTTGTCCTTCGCAGCGGTGGCGGTGTTGATCTTCACTTTCGGTGGGCGTCTGGGGCC
GTGGCGTTGGTGGCAAACGTGGACCCGTGCGCAATGGCTGATCGCGATCGGACTGTGCCCATTGCTATTGATACTTGGCT
TGCCGATCAGCGTCAGCGGACCAGTGGCCAATTTGCTGGCGGTGCCTTGGGTCAGTCTGGTGGTATTGCCGCCAGCCTTG
CTCGGGACCTTGTTACTGCCCGTCCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGTCTGGTCGACCTGTTGTT
CAAGGGGCTGGCATTGATGGCAGGGCGATTCCCCGCCTGGGTGCCGGTCGCGGTGCCGGTGTGGATTTGGGCGCTAGGTA
CCCTGGGGGCCTTTCTTCTATTACTGCCTAAGGGGGTGCCGTTGCGCCCGTTGGGTTGGCCGCTGCTGCTGTTACTGGTT
TTTCCACCTCGCCCGATGCTTGCCGAAGGCGTCGCCGAAGTCTGGCAACTGGACGTCGGCCAGGGCCTGGCCATCCTGGT
GCGCACCCGCCATCACACCTTGTTGTATGACGCCGGGCCGCGTTTTGGCGAATTCGACCTCGGCGAGCGAGTGGTGCTGC
CGTCATTGCGCAAACTGGGCGTGTCCGGGATCGACCTGATGCTGCTCAGTCACGCCGACGCCGATCACGCCGGCGGTGCA
CGTGCGATTGCCAACGGATTGCCGGTGGCGCGGGTCCTGAGCGGTGATCCCGAGGCGCTGCCAGCCGAATTGCGCGCCGA
AGGCTGTGAAAGCGGCCGGCAATGGACCTGGGACGGTGTGGACTTCCGTCTCTGGCAATGGACATCCGCCGCCGACAGCA
ATCAAAAATCCTGTGTCTTGCAGATCGAAGCCAGTGGCGAGCGATTGCTGCTGACCGGTGATATTGATGCGGCAGCCGAG
CGGGCATTGCTCGACAGTCCGCTTGCCGTGCCGACCGATTGGCTGCAATCGCCTCACCACGGCAGTCGCAGTTCCTCTTC
GATGGCGCTGCTCGCCGCGTTGCAACCCAAGGCTGTGCTGATTTCCCGGGGCCAGGGCAATTCCTTTGGCCACCCGCATC
CCACCGTCATGGCGCGCTATCAAAAACGAGGCATGGCGATCTACGATAGCGCCACCCACGGCGCCATTCGTCTGCAACTG
GGACGGTTCAAGCCGCCATGGACGATGCGTCTGGATCGGCGTTTCTGGCGCGATCCGCCACCGTTGGGCCCATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.547	96.237	0.612
comA	Ralstonia pseudosolanacearum GMI1000	33.415	100	0.368