Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3369_RS08870 Genome accession   NZ_CP081178
Coordinates   1962251..1962886 (+) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas mandelii strain KGI_MA19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957251..1967886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3369_RS08850 (K3369_08850) - 1957414..1958346 (+) 933 WP_010461902.1 ABC transporter ATP-binding protein -
  K3369_RS08855 (K3369_08855) - 1958343..1959122 (+) 780 WP_010461900.1 ABC transporter permease -
  K3369_RS08860 (K3369_08860) - 1959264..1959782 (-) 519 WP_221108728.1 DUF2062 domain-containing protein -
  K3369_RS08865 (K3369_08865) comA 1959918..1962152 (+) 2235 WP_221108730.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3369_RS08870 (K3369_08870) exbB 1962251..1962886 (+) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3369_RS08875 (K3369_08875) - 1962883..1963314 (+) 432 WP_010461891.1 biopolymer transporter ExbD -
  K3369_RS08880 (K3369_08880) lpxK 1963314..1964324 (+) 1011 WP_221108732.1 tetraacyldisaccharide 4'-kinase -
  K3369_RS08885 (K3369_08885) - 1964350..1964535 (+) 186 WP_010461887.1 Trm112 family protein -
  K3369_RS08890 (K3369_08890) kdsB 1964532..1965296 (+) 765 WP_077748004.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3369_RS08895 (K3369_08895) - 1965296..1965760 (+) 465 WP_010461884.1 low molecular weight protein-tyrosine-phosphatase -
  K3369_RS08900 (K3369_08900) murB 1965757..1966776 (+) 1020 WP_077748002.1 UDP-N-acetylmuramate dehydrogenase -
  K3369_RS08905 (K3369_08905) - 1967022..1967492 (+) 471 WP_010461879.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=595486 K3369_RS08870 WP_010461893.1 1962251..1962886(+) (exbB) [Pseudomonas mandelii strain KGI_MA19]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=595486 K3369_RS08870 WP_010461893.1 1962251..1962886(+) (exbB) [Pseudomonas mandelii strain KGI_MA19]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCTGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCGGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863