Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M8Z32_RS09320 Genome accession   NZ_CP097555
Coordinates   1997454..1997783 (+) Length   109 a.a.
NCBI ID   WP_034075771.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B1.2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1992454..2002783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8Z32_RS09305 (M8Z32_09300) - 1993069..1994031 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  M8Z32_RS09310 (M8Z32_09305) - 1994031..1995068 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  M8Z32_RS09315 (M8Z32_09310) - 1995266..1997263 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  M8Z32_RS09320 (M8Z32_09315) comEA 1997454..1997783 (+) 330 WP_034075771.1 ComEA family DNA-binding protein Machinery gene
  M8Z32_RS09330 (M8Z32_09325) - 1998001..1999197 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  M8Z32_RS09335 (M8Z32_09330) uvrB 1999385..2001397 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11323.25 Da        Isoelectric Point: 8.0459

>NTDB_id=595099 M8Z32_RS09320 WP_034075771.1 1997454..1997783(+) (comEA) [Pseudomonas aeruginosa strain B1.2]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=595099 M8Z32_RS09320 WP_034075771.1 1997454..1997783(+) (comEA) [Pseudomonas aeruginosa strain B1.2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

39.091

100

0.394
  comEA Vibrio cholerae strain A1552

39.091

100

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385