Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K2L43_RS04185 Genome accession   NZ_CP080761
Coordinates   868646..869863 (-) Length   405 a.a.
NCBI ID   WP_088887536.1    Uniprot ID   -
Organism   Diaphorobacter sp. MNS-0     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 863646..874863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2L43_RS04155 (K2L43_04155) - 864667..865545 (+) 879 WP_011804247.1 ATP-binding protein -
  K2L43_RS04160 (K2L43_04160) - 865542..865988 (+) 447 WP_220638570.1 NUDIX domain-containing protein -
  K2L43_RS04165 (K2L43_04165) - 866057..866287 (-) 231 WP_011804249.1 DNA gyrase inhibitor YacG -
  K2L43_RS04170 (K2L43_04170) zapD 866294..867049 (-) 756 WP_011804250.1 cell division protein ZapD -
  K2L43_RS04175 (K2L43_04175) coaE 867140..867733 (-) 594 WP_253940107.1 dephospho-CoA kinase -
  K2L43_RS04180 (K2L43_04180) - 867765..868646 (-) 882 WP_220638571.1 A24 family peptidase -
  K2L43_RS04185 (K2L43_04185) pilC 868646..869863 (-) 1218 WP_088887536.1 type II secretion system F family protein Machinery gene
  K2L43_RS04190 (K2L43_04190) pilB 869883..871616 (-) 1734 WP_012655751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K2L43_RS04195 (K2L43_04195) - 871977..873068 (+) 1092 WP_220638572.1 site-specific integrase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44409.42 Da        Isoelectric Point: 9.5091

>NTDB_id=594782 K2L43_RS04185 WP_088887536.1 868646..869863(-) (pilC) [Diaphorobacter sp. MNS-0]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=594782 K2L43_RS04185 WP_088887536.1 868646..869863(-) (pilC) [Diaphorobacter sp. MNS-0]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTACG
CGGCGAAGTACGCGCCGCGGGAGAGAATCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCAACGAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAAAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTTCCACTGCTTCAGGCATTTGATATCGTGGGCCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGCGATGTGGAGACAGGAACGTCCCTGAATGCCGCGTTCCGTAAATATCCGATGTACTTCGACAGCCTCTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATTCTGGAAGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTATCCGATCTCAGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACCTCGTTCGGAGCCGACCTGCCCGCCCCTACCCTGTTCG
TGATGGCCATCAGCGAATTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAAAAAATGCAGCGTTTCATGGACCGTTTCCTGCTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGTGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGGCGGTGCATCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAGATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTATTCCCCTCCATGGTGCTGCAGATGTGTGCGATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAAGCCGCCGATTTTTACGAAGCCGAAGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTGATCGGTGGCATCGTGGTGTCCATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.062

100

0.551
  pilG Neisseria gonorrhoeae MS11

53.283

97.778

0.521
  pilG Neisseria meningitidis 44/76-A

53.03

97.778

0.519
  pilC Acinetobacter baylyi ADP1

50.503

98.272

0.496
  pilC Acinetobacter baumannii D1279779

49.622

98.025

0.486
  pilC Legionella pneumophila strain ERS1305867

49.497

98.272

0.486
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Vibrio cholerae strain A1552

40.152

97.778

0.393
  pilC Thermus thermophilus HB27

37.845

98.519

0.373