Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABEKA_RS14805 Genome accession   NZ_CP080636
Coordinates   2767183..2767890 (-) Length   235 a.a.
NCBI ID   WP_004280141.1    Uniprot ID   A0A2K8USH5
Organism   Acinetobacter lwoffii strain EK30A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762183..2772890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS14790 (ABEKA_2814) clpB 2762657..2765236 (-) 2580 WP_005251422.1 ATP-dependent chaperone ClpB -
  ABEKA_RS17365 - 2765465..2765587 (-) 123 WP_243474838.1 MbcA/ParS/Xre antitoxin family protein -
  ABEKA_RS17255 (ABEKA_2815) - 2765613..2765822 (-) 210 WP_005107328.1 antitoxin Xre-like helix-turn-helix domain-containing protein -
  ABEKA_RS14800 (ABEKA_2816) - 2765960..2767009 (-) 1050 WP_005266792.1 NADP(H)-dependent aldo-keto reductase -
  ABEKA_RS14805 (ABEKA_2817) crp 2767183..2767890 (-) 708 WP_004280141.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABEKA_RS14810 (ABEKA_2818) - 2768038..2768460 (+) 423 WP_004280142.1 OsmC family protein -
  ABEKA_RS14815 (ABEKA_2819) - 2768527..2769564 (-) 1038 WP_004646578.1 metallophosphoesterase -
  ABEKA_RS14820 - 2769759..2770297 (+) 539 Protein_2588 transposase -
  ABEKA_RS14825 (ABEKA_2820) - 2770236..2770391 (-) 156 WP_004646576.1 hypothetical protein -
  ABEKA_RS14830 - 2770484..2771259 (-) 776 Protein_2590 sulfite exporter TauE/SafE family protein -
  ABEKA_RS14835 (ABEKA_2823) - 2771328..2772200 (-) 873 WP_004646573.1 MBL fold metallo-hydrolase -
  ABEKA_RS14840 (ABEKA_2824) - 2772203..2772619 (-) 417 WP_004646572.1 DUF6691 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26255.96 Da        Isoelectric Point: 4.7275

>NTDB_id=594633 ABEKA_RS14805 WP_004280141.1 2767183..2767890(-) (crp) [Acinetobacter lwoffii strain EK30A]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEASEAVADGAIDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=594633 ABEKA_RS14805 WP_004280141.1 2767183..2767890(-) (crp) [Acinetobacter lwoffii strain EK30A]
ATGACTTCAAACTTTTCACAATTAAGCACTGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACCACGATCATTGATGCAGGATCAGAATCTAAATCTTTATATTTAATTC
TGAAGGGGTCTGTATCTATCATTCTTCGTGAAGATGATGATCGTGAAATTGTCGTGGCATATTTAAATGCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAGGTTAATCCACAACGTACTGCGGAAGTTCGTACCCGTGATGTGTGTGAAATTGCCGA
AATTACCTATGAAAACTTTCACGAAATTAGCAAGCAATATCCTGATCTGAGCTATGCAGTATTTGCTCAATTAGTACGCC
GCTTGAAAAATACCACACGTAAAGTCACTGATCTGGCATTTATTGATGTTTCAGGCCGGATTGCACGTTGTCTGATCGAC
CTGTCTTCACAGCCAGAAGCGATGATTTTGCCGAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGTCGCATTGT
TGGCTGTTCCCGCGAAATGGTCGGACGTGTACTAAAAACCCTGGAAGAGCAGGGCATGATCGAAACCGATGGTAAAGCCA
TCCTGATCTTTGATGCTTCATTAGAAGAAGCATCTGAAGCAGTGGCAGATGGTGCCATAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8USH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4