Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K3G18_RS12610 Genome accession   NZ_CP080629
Coordinates   2469075..2469692 (-) Length   205 a.a.
NCBI ID   WP_032722140.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2464075..2474692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS12580 (K3G18_12580) rpsT 2464377..2464643 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  K3G18_RS12585 (K3G18_12585) holA 2464658..2465701 (-) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  K3G18_RS12590 (K3G18_12590) - 2465741..2465890 (-) 150 WP_003229985.1 hypothetical protein -
  K3G18_RS12595 (K3G18_12595) yqzM 2465931..2466065 (+) 135 WP_003229983.1 YqzM family protein -
  K3G18_RS12600 (K3G18_12600) comEC 2466105..2468435 (-) 2331 WP_160214965.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3G18_RS12605 (K3G18_12605) comEB 2468439..2469008 (-) 570 WP_003229978.1 ComE operon protein 2 -
  K3G18_RS12610 (K3G18_12610) comEA 2469075..2469692 (-) 618 WP_032722140.1 competence protein ComEA Machinery gene
  K3G18_RS12615 (K3G18_12615) comER 2469776..2470597 (+) 822 WP_032722142.1 late competence protein ComER -
  K3G18_RS12620 (K3G18_12620) yqeM 2470663..2471406 (-) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  K3G18_RS12625 (K3G18_12625) rsfS 2471403..2471759 (-) 357 WP_014480315.1 ribosome silencing factor -
  K3G18_RS12630 (K3G18_12630) yqeK 2471777..2472337 (-) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  K3G18_RS12635 (K3G18_12635) nadD 2472327..2472896 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  K3G18_RS12640 (K3G18_12640) yhbY 2472908..2473198 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  K3G18_RS12645 (K3G18_12645) aroE 2473192..2474034 (-) 843 WP_003229967.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21748.46 Da        Isoelectric Point: 4.8354

>NTDB_id=594527 K3G18_RS12610 WP_032722140.1 2469075..2469692(-) (comEA) [Bacillus subtilis strain YPS-32]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVRHPGVYELRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFPTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=594527 K3G18_RS12610 WP_032722140.1 2469075..2469692(-) (comEA) [Bacillus subtilis strain YPS-32]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAATGAAACAATTGTGATAGACATCAAAGGTGCTGTTCGGCATCCTGGCGTTTATGAATTGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCCAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

98.537

100

0.985
  comEA Staphylococcus aureus MW2

36.364

100

0.39
  comEA Staphylococcus aureus N315

35.455

100

0.38