Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K3F43_RS24540 Genome accession   NZ_CP080626
Coordinates   5454133..5456355 (+) Length   740 a.a.
NCBI ID   WP_101292031.1    Uniprot ID   -
Organism   Pseudomonas sp. S11A 273     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5449133..5461355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F43_RS24520 (K3F43_24520) - 5451010..5451633 (+) 624 WP_045187123.1 glutathione S-transferase family protein -
  K3F43_RS24525 (K3F43_24525) - 5451772..5452704 (+) 933 WP_045187126.1 ABC transporter ATP-binding protein -
  K3F43_RS24530 (K3F43_24530) - 5452701..5453480 (+) 780 WP_045187128.1 ABC transporter permease -
  K3F43_RS24535 (K3F43_24535) - 5453448..5453990 (-) 543 WP_045187130.1 DUF2062 domain-containing protein -
  K3F43_RS24540 (K3F43_24540) comA 5454133..5456355 (+) 2223 WP_101292031.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3F43_RS24545 (K3F43_24545) exbB 5456426..5457061 (+) 636 WP_045187134.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3F43_RS24550 (K3F43_24550) - 5457058..5457489 (+) 432 WP_045187136.1 biopolymer transporter ExbD -
  K3F43_RS24555 (K3F43_24555) lpxK 5457489..5458499 (+) 1011 WP_045187139.1 tetraacyldisaccharide 4'-kinase -
  K3F43_RS24560 (K3F43_24560) - 5458538..5458723 (+) 186 WP_045187141.1 Trm112 family protein -
  K3F43_RS24565 (K3F43_24565) kdsB 5458720..5459484 (+) 765 WP_045187143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3F43_RS24570 (K3F43_24570) - 5459484..5459948 (+) 465 WP_045187146.1 low molecular weight protein-tyrosine-phosphatase -
  K3F43_RS24575 (K3F43_24575) murB 5459945..5460964 (+) 1020 WP_101292033.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80280.27 Da        Isoelectric Point: 10.2841

>NTDB_id=594458 K3F43_RS24540 WP_101292031.1 5454133..5456355(+) (comA) [Pseudomonas sp. S11A 273]
MRTGMLALALGLLCLSVLPVLPSVGILAVLTIIGLFCLPFRMRPLGLFLLGVCWACLSAQQALDDRLVPTLDGRTLWLEG
RVVGLPQQSERSVRFDVEGAQSRRGQLPQRLQLSWFGGPAVNSGERWRLAVTLKRPHGLLNPHGVDREATLLARRIGATG
TVKAGERLTSAEGAWRDSVRQRVLSVDAQGREAELVALVLGDGAGLARESWQALQATGTVHLLVISGQHIGLFAGLIYGL
IAGLARLGWWPQALPWLPWACGLAFAAALSYGLLAGLQVPVQRACVMLAVVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLLPGFWLSFGAVAVLVFTFSGRLGSWRPWQAWGRAQWMIALGLLPILMALGLPVSLSAPLANLFAVPWISLAVLPLAL
LGTLLLPVPFVGQGLLWLAGGLLDGLFRLLGHLAQLQPAWIPQPLPWPLWLLLALGTVLVLLPPGLPMRVLGWPLLLLAV
FAARERIPHGQLEVWQLDVGQGLAFVLRTREHVLLYDAGPAMGDHDLGERVVLPTLHKLGVKAVDLMVLSHADADHAGGA
SALQRGLPVRQILSGEAAKLPPALQAQACVNGQRWQWDGVNFSVWHWQGARDSNQGSCVVLIEAGGERLLLTGDLDVAGE
RAWVRDWQATGIDWLQAPHHGSRTSSSQALLTATTPRGVLISRGRYNAFGHPHAEVMERYSINGIEAYDSAVHGALRLRL
GTFGEPLALRNQRRFWRDPG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=594458 K3F43_RS24540 WP_101292031.1 5454133..5456355(+) (comA) [Pseudomonas sp. S11A 273]
ATGCGCACAGGGATGTTGGCGCTGGCACTTGGCCTGTTGTGTCTGAGTGTACTACCGGTTTTGCCATCGGTCGGGATACT
GGCCGTGTTGACCATTATCGGACTTTTCTGCCTGCCTTTTCGGATGCGTCCACTCGGTCTGTTTCTGCTGGGTGTGTGTT
GGGCCTGCCTGTCGGCGCAGCAGGCGCTGGATGATCGCTTGGTGCCAACGTTGGATGGGCGCACCCTATGGTTGGAGGGT
AGGGTGGTCGGCTTGCCTCAGCAAAGCGAGCGATCAGTACGCTTCGACGTTGAGGGCGCCCAGTCGCGACGTGGACAGCT
GCCACAGCGCCTGCAACTGAGTTGGTTTGGCGGGCCTGCGGTCAATAGTGGCGAGCGCTGGCGGCTGGCAGTCACCCTCA
AGCGTCCCCATGGTTTGCTCAACCCGCACGGTGTCGATCGTGAGGCTACCTTACTGGCCCGGCGTATCGGCGCTACCGGT
ACCGTCAAGGCCGGGGAGCGCCTGACGTCTGCAGAAGGCGCTTGGCGTGATAGCGTGCGCCAGCGCGTGTTGAGTGTGGA
TGCGCAGGGGCGCGAGGCGGAACTGGTGGCGCTGGTATTGGGCGATGGCGCAGGCTTGGCGCGGGAGAGCTGGCAAGCGC
TACAGGCCACCGGCACCGTGCACTTGCTAGTGATCTCCGGGCAGCACATCGGCTTGTTCGCCGGTCTGATCTATGGGTTG
ATTGCTGGCCTGGCTAGGTTGGGCTGGTGGCCGCAAGCCTTGCCCTGGCTGCCTTGGGCCTGTGGGCTGGCCTTTGCCGC
CGCGTTGAGCTACGGCCTGCTGGCCGGTTTGCAGGTGCCGGTGCAGCGAGCCTGTGTGATGTTGGCCGTGGTGTTGCTCT
GGCGTTTGCGTTTTCGCCATCTAGGCGTGGGATTGCCGCTACTGCTGGCGCTCAATGCGGTGTTGCTGTGGGAGCCGCTG
GCGAGTCTTTTGCCGGGTTTCTGGTTGTCTTTCGGCGCCGTTGCGGTACTGGTGTTCACCTTTAGTGGTCGGCTGGGCAG
CTGGCGCCCTTGGCAGGCGTGGGGCCGGGCGCAGTGGATGATTGCCTTGGGCTTGCTACCGATATTGATGGCACTGGGGC
TGCCGGTCAGCCTCAGTGCGCCGCTGGCCAATCTGTTCGCCGTGCCCTGGATCAGCCTGGCAGTGTTGCCGTTGGCGTTG
CTGGGAACCTTGCTGTTGCCCGTGCCGTTTGTTGGGCAGGGTTTACTCTGGTTGGCTGGCGGTTTGCTTGATGGTCTGTT
CCGCCTGCTGGGACACCTTGCTCAGTTGCAGCCCGCATGGATACCGCAGCCGTTGCCGTGGCCGCTGTGGTTATTGCTGG
CCCTGGGCACGGTGCTGGTATTGCTGCCCCCTGGCTTGCCAATGCGTGTTCTGGGCTGGCCCTTGCTGTTGCTGGCGGTA
TTTGCAGCGCGAGAGCGCATACCGCATGGTCAGCTGGAGGTCTGGCAACTGGACGTTGGTCAGGGCCTGGCGTTCGTGCT
GCGTACCCGTGAGCACGTGCTGCTGTACGACGCCGGGCCGGCAATGGGTGATCACGATTTGGGTGAACGCGTGGTATTGC
CGACGCTGCATAAGCTGGGGGTGAAGGCGGTTGACCTGATGGTGCTCAGCCACGCTGACGCTGACCATGCCGGTGGCGCA
TCAGCGCTCCAACGCGGCTTGCCGGTGCGGCAAATACTCAGCGGTGAAGCTGCCAAGCTGCCGCCCGCTTTGCAGGCCCA
AGCCTGTGTCAACGGCCAGCGCTGGCAGTGGGATGGGGTCAATTTCTCTGTCTGGCACTGGCAAGGCGCACGCGACAGCA
ATCAGGGTTCGTGCGTCGTGCTGATCGAGGCGGGCGGTGAGCGTCTGCTGCTCACCGGCGATCTCGATGTCGCGGGCGAG
CGGGCCTGGGTCCGTGACTGGCAGGCCACCGGCATCGACTGGCTGCAAGCGCCGCATCACGGCAGTCGCACATCCTCCAG
TCAGGCGTTGCTGACGGCCACGACGCCGCGTGGCGTGTTGATTTCCAGGGGGCGCTATAACGCCTTTGGCCATCCCCATG
CCGAGGTCATGGAACGCTACTCGATAAATGGCATCGAAGCGTACGACAGCGCTGTGCATGGTGCGCTACGCCTGCGTCTG
GGGACTTTTGGCGAGCCGTTGGCGTTACGCAACCAACGCCGGTTCTGGCGCGACCCGGGTTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.162

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.534

100

0.376