Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3F43_RS24545 Genome accession   NZ_CP080626
Coordinates   5456426..5457061 (+) Length   211 a.a.
NCBI ID   WP_045187134.1    Uniprot ID   A0AB39JSN1
Organism   Pseudomonas sp. S11A 273     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5451426..5462061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F43_RS24525 (K3F43_24525) - 5451772..5452704 (+) 933 WP_045187126.1 ABC transporter ATP-binding protein -
  K3F43_RS24530 (K3F43_24530) - 5452701..5453480 (+) 780 WP_045187128.1 ABC transporter permease -
  K3F43_RS24535 (K3F43_24535) - 5453448..5453990 (-) 543 WP_045187130.1 DUF2062 domain-containing protein -
  K3F43_RS24540 (K3F43_24540) comA 5454133..5456355 (+) 2223 WP_101292031.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3F43_RS24545 (K3F43_24545) exbB 5456426..5457061 (+) 636 WP_045187134.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3F43_RS24550 (K3F43_24550) - 5457058..5457489 (+) 432 WP_045187136.1 biopolymer transporter ExbD -
  K3F43_RS24555 (K3F43_24555) lpxK 5457489..5458499 (+) 1011 WP_045187139.1 tetraacyldisaccharide 4'-kinase -
  K3F43_RS24560 (K3F43_24560) - 5458538..5458723 (+) 186 WP_045187141.1 Trm112 family protein -
  K3F43_RS24565 (K3F43_24565) kdsB 5458720..5459484 (+) 765 WP_045187143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3F43_RS24570 (K3F43_24570) - 5459484..5459948 (+) 465 WP_045187146.1 low molecular weight protein-tyrosine-phosphatase -
  K3F43_RS24575 (K3F43_24575) murB 5459945..5460964 (+) 1020 WP_101292033.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22832.02 Da        Isoelectric Point: 6.8759

>NTDB_id=594459 K3F43_RS24545 WP_045187134.1 5456426..5457061(+) (exbB) [Pseudomonas sp. S11A 273]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTANASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=594459 K3F43_RS24545 WP_045187134.1 5456426..5457061(+) (exbB) [Pseudomonas sp. S11A 273]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTTGC
CGAGCGCCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCGCCGCACCTGCTCGGTCAAGTGTGGATGTGGATCAAAGACA
AACAGCTGACCAGCGACAAGCTCAAGGCCCTGCGCGCGGACTCACCCTTGGGCGAGATCCTCGCCGCAGGTCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCTCGCGTCATCCACGAGCTGGAGCGTTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTACTCGGTCTACTTGGTACCGTACTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCAGCGGCATGACCGCCAACGCCTCGGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACTACGGCG
GCGGGTCTGATGGTGGGTATTCCTGCGGTGTTTTTCCACCGTTTCCTGCAGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAAGAAGCTATCAAGCTGGTTGAAGTGGTGCAGGGTGACCGTGATGTCGACCTGGCTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863