Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K3F44_RS12620 Genome accession   NZ_CP080625
Coordinates   2732851..2735061 (-) Length   736 a.a.
NCBI ID   WP_220632356.1    Uniprot ID   -
Organism   Pseudomonas sp. S07E 245     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2727851..2740061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F44_RS12585 (K3F44_12585) murB 2728217..2729236 (-) 1020 WP_150572939.1 UDP-N-acetylmuramate dehydrogenase -
  K3F44_RS12590 (K3F44_12590) - 2729233..2729697 (-) 465 WP_101321504.1 low molecular weight protein-tyrosine-phosphatase -
  K3F44_RS12595 (K3F44_12595) kdsB 2729697..2730461 (-) 765 WP_101321506.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3F44_RS12600 (K3F44_12600) - 2730458..2730643 (-) 186 WP_028633616.1 Trm112 family protein -
  K3F44_RS12605 (K3F44_12605) lpxK 2730687..2731694 (-) 1008 WP_220632355.1 tetraacyldisaccharide 4'-kinase -
  K3F44_RS12610 (K3F44_12610) - 2731694..2732128 (-) 435 WP_060481531.1 biopolymer transporter ExbD -
  K3F44_RS12615 (K3F44_12615) exbB 2732125..2732760 (-) 636 WP_060481604.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3F44_RS12620 (K3F44_12620) comA 2732851..2735061 (-) 2211 WP_220632356.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3F44_RS12625 (K3F44_12625) - 2735204..2735830 (+) 627 WP_150570139.1 DUF2062 domain-containing protein -
  K3F44_RS12630 (K3F44_12630) - 2735714..2736493 (-) 780 WP_103438136.1 ABC transporter permease -
  K3F44_RS12635 (K3F44_12635) - 2736490..2737422 (-) 933 WP_150570138.1 ABC transporter ATP-binding protein -
  K3F44_RS12640 (K3F44_12640) - 2737568..2738191 (-) 624 WP_220632357.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79546.16 Da        Isoelectric Point: 9.4626

>NTDB_id=594424 K3F44_RS12620 WP_220632356.1 2732851..2735061(-) (comA) [Pseudomonas sp. S07E 245]
MRTGMLALALGLLCLGFLPVLPTVGWLVVMLLAALGCLATRVWPLGCLLLGFCWACWSAQQALDDRLAHSLDGRTLWLEG
RVVGLPAVSAHGVRFELDEPASRRAELPGRLQLSWFDGPEIRAGERWRLAVTLKRPRGLLNPHGPDREATLLARRIGATG
TVKAGALLEPVAGGWRDNLRQRLLAVDAWGREATLAALVLGDGSGLARQDWQTLQATGTVHLLVISGQHIGLVAGLVYGL
VAGLLRYGGWPRRWPWLPWACGLAMTAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRQVSAFVPLLMALCGVLLVEPL
ASLLPGFWLSFGAVTVLICCFAQRLGGWRPWQAWTRAQWVIAIGLLPAMLALGLPISLSAPLANLLAVPWISFVVLPLAL
LGTLLLPLAGFGELLLWLAGAALAGLFDVLTVVAQWQPAWIARQLPLLAWLLVLSGALIVLLPRGVPMRGLGALMLLALW
VPGNSLPQGQVEVLQLDVGQGLAILLRTRNHSLLYDAGPARGESDLGESVVLPTLRKLGVDRLDVLLISHAHADHAGGAA
AVQRGLSVGRVVAGESEQAFQAQSCETGQGWQWDGVDFSLWHWPQARSSNDRSCVLLVEAQGERLLLAGDIEASAERAWL
AAHEGKRIDWLQSPHHGSRSSSTEAFIAATRPRGVLISRGAHNGFGHPHAQVLERYQRHGLAIHDTAIEGALSLRLGAQS
QVAGQRAQRRFWRDKE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=594424 K3F44_RS12620 WP_220632356.1 2732851..2735061(-) (comA) [Pseudomonas sp. S07E 245]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGTTGTGCCTGGGCTTTCTACCCGTTCTGCCGACGGTCGGCTGGCT
GGTGGTGATGCTGCTGGCTGCGCTTGGCTGCCTGGCTACGCGAGTCTGGCCGCTGGGCTGCTTGCTGCTGGGCTTTTGCT
GGGCGTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGTCTGGCGCATTCACTTGATGGCCGCACGCTATGGCTTGAGGGG
CGCGTGGTCGGCCTGCCAGCGGTATCGGCCCACGGTGTGCGCTTCGAGCTGGATGAACCCGCTTCGCGCCGCGCCGAATT
GCCCGGGCGCCTGCAACTGAGCTGGTTCGACGGCCCAGAGATTCGTGCCGGAGAGCGCTGGCGCCTGGCCGTGACCCTGA
AACGCCCGCGCGGCCTGCTCAATCCACATGGGCCGGACCGCGAGGCGACGCTGTTGGCCCGGCGCATCGGCGCCACTGGC
ACGGTCAAGGCGGGAGCGTTGCTAGAGCCGGTGGCCGGCGGCTGGCGCGACAATTTGCGCCAGCGCCTGCTGGCAGTGGA
TGCCTGGGGCCGCGAAGCGACGTTGGCGGCGCTGGTACTGGGCGATGGCTCGGGGCTGGCCAGGCAAGACTGGCAAACGC
TGCAGGCGACCGGCACGGTGCACTTGTTGGTCATCTCGGGCCAACACATTGGGTTGGTCGCAGGGTTGGTCTACGGCTTG
GTGGCGGGGCTGTTACGTTACGGAGGCTGGCCGCGGCGCTGGCCATGGCTGCCGTGGGCGTGCGGGCTGGCCATGACGGC
CGCGCTGGGCTACGGCTGGCTGGCCGGGTTTGGCGTGCCTGTGCAGCGGGCCTGTCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCCTGCGCTTTCGCCAAGTGAGCGCCTTTGTACCACTGTTGATGGCGCTGTGTGGTGTGCTGCTGGTTGAGCCGTTG
GCCAGTTTGCTGCCCGGATTCTGGTTGTCGTTCGGCGCGGTGACAGTGCTGATCTGCTGCTTTGCCCAGCGCCTAGGCGG
TTGGCGGCCTTGGCAAGCGTGGACGCGTGCGCAGTGGGTGATCGCCATCGGCTTGTTGCCGGCGATGCTGGCGCTGGGCC
TACCGATCAGTCTGAGCGCGCCGTTGGCTAATCTGCTCGCGGTGCCCTGGATCAGCTTCGTGGTGCTGCCGTTGGCGTTG
CTGGGCACCTTGTTGCTGCCGCTGGCGGGGTTTGGCGAACTGCTGCTATGGCTGGCTGGCGCAGCGCTGGCTGGGTTGTT
CGACGTGCTGACGGTGGTGGCTCAGTGGCAGCCGGCATGGATTGCCCGGCAGTTGCCGCTACTGGCCTGGTTGTTGGTGC
TCAGTGGCGCGTTGATCGTGTTGCTGCCCCGTGGCGTACCCATGCGTGGCCTGGGCGCGCTGATGCTGCTGGCGCTGTGG
GTGCCTGGCAACTCGTTGCCGCAGGGGCAGGTCGAGGTGCTGCAGCTGGACGTCGGCCAAGGCCTGGCGATCCTTTTGCG
CACGCGCAACCACAGCCTGCTCTACGATGCTGGCCCAGCGCGCGGCGAGAGCGATCTGGGCGAAAGTGTAGTGCTGCCTA
CTTTGCGTAAACTGGGCGTCGATCGACTGGATGTGCTGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCAGCG
GCCGTGCAGCGCGGCCTGTCGGTCGGGCGCGTTGTGGCCGGTGAGTCGGAGCAGGCCTTCCAGGCACAAAGCTGCGAGAC
GGGGCAGGGCTGGCAGTGGGACGGGGTCGACTTTTCACTCTGGCATTGGCCGCAGGCGCGCTCAAGCAATGACCGCTCCT
GCGTATTGCTGGTCGAGGCGCAGGGCGAGCGTCTGTTGTTGGCCGGCGACATTGAAGCCAGCGCCGAACGCGCCTGGCTG
GCGGCGCATGAAGGCAAACGCATCGACTGGCTGCAGTCGCCGCACCACGGCAGTCGCAGCTCCTCCACCGAGGCGTTCAT
TGCTGCCACCAGGCCGCGCGGCGTATTGATTTCCCGCGGTGCGCACAACGGTTTCGGCCATCCGCATGCGCAGGTGCTGG
AACGCTACCAGCGCCATGGGCTGGCGATTCACGACACCGCCATAGAGGGCGCCTTGAGCTTGCGCCTGGGCGCTCAATCC
CAGGTTGCCGGGCAGCGTGCCCAGCGCAGGTTCTGGCGTGACAAAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.583

97.826

0.583
  comA Ralstonia pseudosolanacearum GMI1000

34.527

100

0.367