Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3F44_RS12615 Genome accession   NZ_CP080625
Coordinates   2732125..2732760 (-) Length   211 a.a.
NCBI ID   WP_060481604.1    Uniprot ID   A0A2K9CGI7
Organism   Pseudomonas sp. S07E 245     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2727125..2737760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F44_RS12585 (K3F44_12585) murB 2728217..2729236 (-) 1020 WP_150572939.1 UDP-N-acetylmuramate dehydrogenase -
  K3F44_RS12590 (K3F44_12590) - 2729233..2729697 (-) 465 WP_101321504.1 low molecular weight protein-tyrosine-phosphatase -
  K3F44_RS12595 (K3F44_12595) kdsB 2729697..2730461 (-) 765 WP_101321506.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3F44_RS12600 (K3F44_12600) - 2730458..2730643 (-) 186 WP_028633616.1 Trm112 family protein -
  K3F44_RS12605 (K3F44_12605) lpxK 2730687..2731694 (-) 1008 WP_220632355.1 tetraacyldisaccharide 4'-kinase -
  K3F44_RS12610 (K3F44_12610) - 2731694..2732128 (-) 435 WP_060481531.1 biopolymer transporter ExbD -
  K3F44_RS12615 (K3F44_12615) exbB 2732125..2732760 (-) 636 WP_060481604.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3F44_RS12620 (K3F44_12620) comA 2732851..2735061 (-) 2211 WP_220632356.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3F44_RS12625 (K3F44_12625) - 2735204..2735830 (+) 627 WP_150570139.1 DUF2062 domain-containing protein -
  K3F44_RS12630 (K3F44_12630) - 2735714..2736493 (-) 780 WP_103438136.1 ABC transporter permease -
  K3F44_RS12635 (K3F44_12635) - 2736490..2737422 (-) 933 WP_150570138.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22933.25 Da        Isoelectric Point: 7.3616

>NTDB_id=594423 K3F44_RS12615 WP_060481604.1 2732125..2732760(-) (exbB) [Pseudomonas sp. S07E 245]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKSLRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDREVEVAGVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=594423 K3F44_RS12615 WP_060481604.1 2732125..2732760(-) (exbB) [Pseudomonas sp. S07E 245]
GTGTGGGAATTGGTAAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGTCGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTAACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGAGCCTGCGCGCTGACTCGCCGCTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATTGAAGAAGCCGCCTCGCGGGTTATTCACGAGCTCGAACGCTATAT
CAGCACGCTCGGCACCATCGCTGCGATGGCACCGCTGCTGGGTCTGCTCGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCTTCGGTGCTCGCCGGTGGCATCTCCAAAGCCCTGGTGACCACGGCT
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGACGAGTTGGTGGTCGGTAT
GGAGCAAGAGGCGATCAAGCTGGTCGAAGTCGTGCAAGGTGATCGCGAAGTGGAAGTGGCGGGAGTCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9CGI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825