Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABVS_RS05670 Genome accession   NZ_CP080576
Coordinates   1157096..1158520 (+) Length   474 a.a.
NCBI ID   WP_086044365.1    Uniprot ID   A0A2K8UP47
Organism   Acinetobacter lwoffii strain VS15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152096..1163520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05650 (ABVS_1182) thrC 1152380..1153519 (+) 1140 WP_004281061.1 threonine synthase -
  ABVS_RS05655 (ABVS_1183) - 1153577..1154638 (-) 1062 WP_004281060.1 serine hydrolase -
  ABVS_RS05660 (ABVS_1184) - 1154858..1155493 (+) 636 WP_004281059.1 response regulator transcription factor GacA -
  ABVS_RS05665 (ABVS_1185) pilS 1155516..1157081 (+) 1566 WP_004281058.1 sensor histidine kinase Regulator
  ABVS_RS05670 (ABVS_1186) pilR 1157096..1158520 (+) 1425 WP_086044365.1 sigma-54-dependent transcriptional regulator Regulator
  ABVS_RS05675 (ABVS_1187) - 1158521..1159693 (-) 1173 WP_086044364.1 S41 family peptidase -
  ABVS_RS05680 (ABVS_1188) gpmI 1159724..1161271 (-) 1548 WP_222112348.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABVS_RS05685 (ABVS_1189) lptG 1161396..1162466 (-) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53561.74 Da        Isoelectric Point: 6.1616

>NTDB_id=594192 ABVS_RS05670 WP_086044365.1 1157096..1158520(+) (pilR) [Acinetobacter lwoffii strain VS15]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEYAKKCLANHQYDACLTDLNLPDGNGLELLDWIGNLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGISNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=594192 ABVS_RS05670 WP_086044365.1 1157096..1158520(+) (pilR) [Acinetobacter lwoffii strain VS15]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAAGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTCTGGAATACGCTAAAAAATGCCTTGCCAATCATCAGTATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGGCACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCTGCGCTCAAAGCAGGGGCTTTTGACTTTGTCAGCAA
ACCGATTAATCAAAAACACCTGGAGCAGCTCTTACAAAAAGCGCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ACGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGATCCCAGGCACCAGTTTTTATCACAGGGGAATCAGGCACAGGCAAGGAAGTCGTGGCCAATCTGGTACATCGCCTGAG
TAACCGCAACGAAGGTCCTTTTATTGCGATTAACTGTGGCGCCATTCCGACTGAGTTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGACTGATTCAATCTGCCCATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCTATGCAGGTCAAATTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCGGATACCGAAATTGATGTGGATTTCCGTGTGATCAGTGCCACGCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCGCTGCGTGAACGCGGCCAGGATATT
CTGTTATTGGCCGAACACTTTATTCAGAAGATTTGCCAGGAATGGGGCATTTCCAATAAAAAACTGACCGAACGCAGCAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTACGTGAATTACGTAACATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGTGCACCGCTGCGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATTATTGCGACCGAAACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGTCTAGAGCTGTATTTGGA
AAAGGTCGAAAAAGAAATTTTACTCAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UP47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.84

100

0.738
  pilR Pseudomonas aeruginosa PAK

49.024

97.257

0.477