Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABVS_RS05665 Genome accession   NZ_CP080576
Coordinates   1155516..1157081 (+) Length   521 a.a.
NCBI ID   WP_004281058.1    Uniprot ID   A0A2K8UN05
Organism   Acinetobacter lwoffii strain VS15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150516..1162081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05645 (ABVS_1181) - 1151016..1152323 (+) 1308 WP_005263945.1 homoserine dehydrogenase -
  ABVS_RS05650 (ABVS_1182) thrC 1152380..1153519 (+) 1140 WP_004281061.1 threonine synthase -
  ABVS_RS05655 (ABVS_1183) - 1153577..1154638 (-) 1062 WP_004281060.1 serine hydrolase -
  ABVS_RS05660 (ABVS_1184) - 1154858..1155493 (+) 636 WP_004281059.1 response regulator transcription factor GacA -
  ABVS_RS05665 (ABVS_1185) pilS 1155516..1157081 (+) 1566 WP_004281058.1 sensor histidine kinase Regulator
  ABVS_RS05670 (ABVS_1186) pilR 1157096..1158520 (+) 1425 WP_086044365.1 sigma-54-dependent transcriptional regulator Regulator
  ABVS_RS05675 (ABVS_1187) - 1158521..1159693 (-) 1173 WP_086044364.1 S41 family peptidase -
  ABVS_RS05680 (ABVS_1188) gpmI 1159724..1161271 (-) 1548 WP_222112348.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59620.86 Da        Isoelectric Point: 6.3552

>NTDB_id=594191 ABVS_RS05665 WP_004281058.1 1155516..1157081(+) (pilS) [Acinetobacter lwoffii strain VS15]
MAQQKNYAELNQYHLGIWYSAYRLLISTGLLLIFMLTYPELTTDYQYPQLYYYALGIGVAINTVQLFVLKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLVAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQVLHQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADIRD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=594191 ABVS_RS05665 WP_004281058.1 1155516..1157081(+) (pilS) [Acinetobacter lwoffii strain VS15]
ATGGCACAACAAAAAAACTATGCTGAACTGAATCAATACCATCTCGGTATCTGGTACAGCGCTTATCGTCTGCTGATCAG
CACCGGTTTGTTGCTGATTTTTATGCTGACCTACCCCGAACTCACCACCGATTATCAATACCCGCAGCTGTATTATTATG
CACTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGTGCTGAAATGGATCAGACGCCTGATCCAGCCGCAGCTG
ATTATGATTTTCTTTAGCGATGTCTGCGTTTTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGCT
GCTGTTTGTGATTACTATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTGGTCGTCACGCTGGTTGCTGTTA
TCAGCGTAATTTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCATCACTCAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGACAAATTGCCATACGCCGCTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATTGAAACCGGCTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTCACCTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAAACGCTAGAAAATGGTGAGCGCTTTCAGTT
TGAATCCCAACAAAGTCGCTATAATATTCATGTGCAAGTACAAAAGCTGATTGTGCCGCATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCGGCCAGTATT
GCCCATGAAATTCGTAATCCATTGGCGGCTATTGTACAGGCCAATGATTTATATCTGGATTCAGAAACTGAACAACAACA
AGTGCTCCACCAGATGATTGGTCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCCGATATTCGCGAT
CAGATTCAATTTAATATTGATATCCCGCTGGTGATTCAGTTTGATGAAGCACAGTTCCGGCAAATCCTGATTAATCTGAT
TCGTAATGCGATTCGTCACAATTCAGCCGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAAGCTCTATTGTTCAAACCCTTTTTTAGCACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UN05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.634

96.929

0.549