Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K2W83_RS00055 Genome accession   NZ_CP080568
Coordinates   13127..13624 (+) Length   165 a.a.
NCBI ID   WP_054449476.1    Uniprot ID   A0A0R1FMI4
Organism   Apilactobacillus kunkeei strain DSMZ 12361     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8127..18624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W83_RS00040 (K2W83_00040) - 10109..11398 (+) 1290 WP_054449474.1 MFS transporter -
  K2W83_RS00045 (K2W83_00045) - 11520..12608 (+) 1089 WP_054449475.1 hypothetical protein -
  K2W83_RS00050 (K2W83_00050) rpsF 12792..13082 (+) 291 WP_034530636.1 30S ribosomal protein S6 -
  K2W83_RS00055 (K2W83_00055) ssb 13127..13624 (+) 498 WP_054449476.1 single-stranded DNA-binding protein Machinery gene
  K2W83_RS00060 (K2W83_00060) rpsR 13653..13889 (+) 237 WP_034530639.1 30S ribosomal protein S18 -
  K2W83_RS00065 (K2W83_00065) - 14053..16089 (+) 2037 WP_080997398.1 DHH family phosphoesterase -
  K2W83_RS00070 (K2W83_00070) rplI 16157..16609 (+) 453 WP_041152670.1 50S ribosomal protein L9 -
  K2W83_RS00075 (K2W83_00075) dnaB 16634..18022 (+) 1389 WP_034530644.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17900.29 Da        Isoelectric Point: 4.5407

>NTDB_id=594091 K2W83_RS00055 WP_054449476.1 13127..13624(+) (ssb) [Apilactobacillus kunkeei strain DSMZ 12361]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFASSNNAAPSNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=594091 K2W83_RS00055 WP_054449476.1 13127..13624(+) (ssb) [Apilactobacillus kunkeei strain DSMZ 12361]
ATGATTAATCGTACAACTTTAACTGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACCAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAACAATCCTTTTGCTTCATCAA
ACAATGCTGCCCCATCTAATGGTGGTAACAACTCAGCGGATCCATTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FMI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.471

100

0.685
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364