Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K1Y48_RS07120 Genome accession   NZ_CP080536
Coordinates   1420670..1422028 (+) Length   452 a.a.
NCBI ID   WP_229065890.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain GT2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415670..1427028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1Y48_RS07105 (K1Y48_07130) aroE 1416371..1417270 (+) 900 WP_064218849.1 shikimate dehydrogenase -
  K1Y48_RS07110 (K1Y48_07135) pilB 1417240..1418949 (+) 1710 WP_215849997.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K1Y48_RS07115 (K1Y48_07140) - 1419075..1420673 (+) 1599 WP_229065889.1 two-component system sensor histidine kinase NtrB -
  K1Y48_RS07120 (K1Y48_07145) pilR 1420670..1422028 (+) 1359 WP_229065890.1 sigma-54-dependent transcriptional regulator Regulator
  K1Y48_RS07125 (K1Y48_07150) - 1422025..1422825 (+) 801 WP_064220377.1 prepilin peptidase -
  K1Y48_RS07130 (K1Y48_07155) coaE 1422826..1423428 (+) 603 WP_215849805.1 dephospho-CoA kinase -
  K1Y48_RS07135 (K1Y48_07160) - 1423545..1424297 (+) 753 WP_064220379.1 cell division protein ZapD -
  K1Y48_RS07140 (K1Y48_07165) - 1424331..1425341 (+) 1011 WP_064220380.1 class 1 fructose-bisphosphatase -
  K1Y48_RS07145 (K1Y48_07170) - 1425432..1425752 (+) 321 WP_064220381.1 hypothetical protein -
  K1Y48_RS07150 (K1Y48_07175) - 1425860..1426582 (+) 723 WP_215849804.1 hypothetical protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48441.67 Da        Isoelectric Point: 5.8474

>NTDB_id=593614 K1Y48_RS07120 WP_229065890.1 1420670..1422028(+) (pilR) [Acidithiobacillus ferriphilus strain GT2]
MMADFSVLPPALIVDDEPNIVELLGITLQGMGIAVTGAYSLAEAFARLAEGAPSLCLSDLRLPDGSGIDLVRRLHALHPR
VPVAVITAYSSADGAVEAMQAGAFDYMAKPIELTRLRRLISQAVDLARLSPMGSDGTQRLVGDSPVMRRLRDDIRRVARS
NAPVHITGESGTGKELAARAIHASGVRHDKPFVAVNCGAIPEGLVESELFGAEKGAYSGAVQRREGLFVAANGGTIFLDE
VGELPMMVQVKLLRAIQERSIRPLGASREIPLDLRFISATHRDLQEMVVAGSFRRDLLYRLDVVRLHMPPLREHPEDIPQ
LAEVILQRIGGAQPGVPTRLSAGTLARLGGYAFPGNVRELENLLERRIALQRDDILPEEELTSSGRVAPENSVLAAVSAS
AAAAGLDTAEAALLRQMLGQAGGDRHHAADLLGVSVQSLELRLSRLSLEEIA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=593614 K1Y48_RS07120 WP_229065890.1 1420670..1422028(+) (pilR) [Acidithiobacillus ferriphilus strain GT2]
ATGATGGCCGATTTTTCCGTATTGCCACCTGCCCTGATCGTGGATGATGAGCCGAATATCGTTGAATTGCTGGGCATTAC
GTTGCAAGGTATGGGAATCGCTGTCACCGGTGCCTATTCCCTCGCAGAGGCCTTCGCCCGCCTCGCCGAAGGTGCCCCCT
CTTTATGCTTGAGCGATCTGCGTTTGCCGGATGGTTCGGGTATTGATCTGGTACGTCGTCTACACGCGTTGCATCCGCGA
GTACCGGTCGCCGTGATTACGGCCTACTCTTCCGCCGATGGCGCCGTCGAGGCGATGCAGGCAGGGGCCTTTGATTACAT
GGCTAAGCCCATCGAACTTACGCGTCTGCGGCGACTGATATCGCAAGCCGTTGATCTCGCTCGCCTGTCACCGATGGGTT
CGGACGGTACGCAAAGGTTGGTGGGCGATTCCCCGGTCATGCGGCGCTTGCGCGACGATATCCGCCGTGTCGCGCGAAGT
AACGCGCCGGTACATATTACCGGTGAGTCTGGTACGGGTAAGGAGTTGGCAGCGCGTGCGATACACGCCTCGGGGGTCCG
TCACGACAAGCCTTTCGTGGCCGTCAACTGCGGCGCCATTCCCGAGGGACTGGTAGAAAGCGAGCTCTTTGGTGCCGAAA
AGGGGGCTTACTCCGGTGCTGTACAGCGCCGCGAGGGGCTCTTTGTGGCGGCCAATGGCGGTACCATTTTCCTGGATGAG
GTCGGTGAGCTACCGATGATGGTGCAGGTTAAGCTCCTGCGCGCCATTCAGGAGCGCAGCATTCGTCCATTGGGTGCATC
GCGGGAAATTCCCCTGGATCTGCGTTTTATCTCCGCAACCCACCGTGATTTGCAAGAGATGGTTGTTGCCGGTAGCTTTC
GTCGGGATCTCCTGTATCGATTGGATGTCGTGCGACTTCATATGCCTCCCTTGCGTGAGCATCCGGAGGATATTCCTCAG
TTGGCAGAGGTGATTCTGCAGCGTATCGGGGGCGCGCAGCCTGGTGTGCCGACGCGGCTGTCTGCGGGGACTCTTGCGCG
ACTGGGTGGTTACGCCTTCCCCGGCAATGTCCGCGAACTGGAAAATTTGCTGGAGCGTCGTATCGCGTTACAGCGGGACG
ATATTCTACCTGAAGAAGAACTTACGTCCTCTGGCCGCGTGGCGCCAGAAAACAGCGTACTTGCCGCTGTATCGGCAAGC
GCTGCCGCGGCTGGTTTAGACACGGCCGAGGCAGCATTACTGCGCCAGATGCTGGGGCAGGCCGGGGGAGACCGGCATCA
TGCCGCAGATCTGCTGGGTGTCAGTGTGCAGTCTCTGGAACTGAGACTCAGCAGATTGTCTCTGGAAGAAATCGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-120)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.661

98.009

0.487
  pilR Acinetobacter baumannii strain A118

40.13

100

0.409