Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KTJ85_RS11615 Genome accession   NZ_CP080509
Coordinates   2310323..2310658 (+) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus sp. 7D3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305323..2315658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS11595 (KTJ85_11595) gcvT 2305927..2307027 (-) 1101 WP_115997629.1 glycine cleavage system aminomethyltransferase GcvT -
  KTJ85_RS11600 (KTJ85_11600) - 2307451..2309121 (+) 1671 WP_065981874.1 DEAD/DEAH box helicase -
  KTJ85_RS11605 (KTJ85_11605) - 2309142..2309936 (+) 795 WP_065981875.1 YqhG family protein -
  KTJ85_RS11610 (KTJ85_11610) sinI 2310116..2310289 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  KTJ85_RS11615 (KTJ85_11615) sinR 2310323..2310658 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  KTJ85_RS11620 (KTJ85_11620) tasA 2310706..2311491 (-) 786 WP_013352862.1 biofilm matrix protein TasA -
  KTJ85_RS11625 (KTJ85_11625) sipW 2311556..2312140 (-) 585 WP_212098460.1 signal peptidase I SipW -
  KTJ85_RS11630 (KTJ85_11630) tapA 2312112..2312783 (-) 672 WP_212098462.1 amyloid fiber anchoring/assembly protein TapA -
  KTJ85_RS11635 (KTJ85_11635) - 2313041..2313370 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  KTJ85_RS11640 (KTJ85_11640) - 2313411..2313590 (-) 180 WP_016938971.1 YqzE family protein -
  KTJ85_RS11645 (KTJ85_11645) comGG 2313647..2314024 (-) 378 WP_212098464.1 competence type IV pilus minor pilin ComGG Machinery gene
  KTJ85_RS11650 (KTJ85_11650) comGF 2314026..2314526 (-) 501 WP_249199234.1 competence type IV pilus minor pilin ComGF -
  KTJ85_RS11655 (KTJ85_11655) comGE 2314435..2314749 (-) 315 WP_065981881.1 competence type IV pilus minor pilin ComGE Machinery gene
  KTJ85_RS11660 (KTJ85_11660) comGD 2314733..2315170 (-) 438 WP_045510590.1 competence type IV pilus minor pilin ComGD Machinery gene
  KTJ85_RS11665 (KTJ85_11665) comGC 2315160..2315426 (-) 267 WP_238156997.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=593397 KTJ85_RS11615 WP_014470659.1 2310323..2310658(+) (sinR) [Bacillus sp. 7D3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=593397 KTJ85_RS11615 WP_014470659.1 2310323..2310658(+) (sinR) [Bacillus sp. 7D3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGTGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982