Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   K0V03_RS08650 Genome accession   NZ_CP080508
Coordinates   1613404..1613523 (+) Length   39 a.a.
NCBI ID   WP_085185514.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608404..1618523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS08630 (K0V03_08630) albF 1608575..1609855 (+) 1281 WP_085185520.1 pitrilysin family protein -
  K0V03_RS08635 (K0V03_08635) albG 1609852..1610553 (+) 702 WP_085185518.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  K0V03_RS08640 (K0V03_08640) - 1610690..1612045 (-) 1356 WP_085185516.1 YncE family protein -
  K0V03_RS08645 (K0V03_08645) rapF 1612275..1613420 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  K0V03_RS08650 (K0V03_08650) phrF 1613404..1613523 (+) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  K0V03_RS08655 (K0V03_08655) ywhH 1613621..1614093 (+) 473 Protein_1710 YbaK/EbsC family protein -
  K0V03_RS08660 (K0V03_08660) speB 1614124..1614996 (-) 873 WP_003227545.1 agmatinase -
  K0V03_RS08665 (K0V03_08665) speE 1615057..1615887 (-) 831 WP_003227543.1 spermidine synthase -
  K0V03_RS08670 (K0V03_08670) pbpG 1616089..1618164 (+) 2076 WP_085185512.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4259.20 Da        Isoelectric Point: 10.4997

>NTDB_id=593317 K0V03_RS08650 WP_085185514.1 1613404..1613523(+) (phrF) [Bacillus subtilis strain HD15]
MKLKSKLLLFCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=593317 K0V03_RS08650 WP_085185514.1 1613404..1613523(+) (phrF) [Bacillus subtilis strain HD15]
ATGAAATTGAAGTCTAAACTATTACTCTTTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487