Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K0V03_RS05435 Genome accession   NZ_CP080508
Coordinates   975278..975922 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 970278..980922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS05400 (K0V03_05400) mrpB 971470..971901 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  K0V03_RS05405 (K0V03_05405) mrpC 971901..972242 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  K0V03_RS05410 (K0V03_05410) mrpD 972235..973716 (+) 1482 WP_085185944.1 Na+/H+ antiporter subunit D -
  K0V03_RS05415 (K0V03_05415) mrpE 973722..974198 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  K0V03_RS05420 (K0V03_05420) mrpF 974198..974482 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  K0V03_RS05425 (K0V03_05425) mnhG 974466..974840 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  K0V03_RS05430 (K0V03_05430) yuxO 974879..975259 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  K0V03_RS05435 (K0V03_05435) comA 975278..975922 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  K0V03_RS05440 (K0V03_05440) comP 976003..978300 (-) 2298 WP_085185942.1 histidine kinase Regulator
  K0V03_RS05445 (K0V03_05445) comX 978308..978469 (-) 162 WP_003241045.1 competence pheromone ComX -
  K0V03_RS05450 (K0V03_05450) - 978484..979344 (-) 861 WP_032677058.1 polyprenyl synthetase family protein -
  K0V03_RS05455 (K0V03_05455) degQ 979529..979669 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  K0V03_RS05460 (K0V03_05460) - 979891..980016 (+) 126 WP_120028613.1 hypothetical protein -
  K0V03_RS05465 (K0V03_05465) - 980131..980499 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=593304 K0V03_RS05435 WP_003220716.1 975278..975922(-) (comA) [Bacillus subtilis strain HD15]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=593304 K0V03_RS05435 WP_003220716.1 975278..975922(-) (comA) [Bacillus subtilis strain HD15]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1