Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K0V03_RS01390 Genome accession   NZ_CP080508
Coordinates   239163..239498 (+) Length   111 a.a.
NCBI ID   WP_121548932.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 234163..244498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS01370 (K0V03_01370) gcvT 234755..235843 (-) 1089 WP_085186486.1 glycine cleavage system aminomethyltransferase GcvT -
  K0V03_RS01375 (K0V03_01375) hepAA 236285..237958 (+) 1674 WP_085186487.1 DEAD/DEAH box helicase -
  K0V03_RS01380 (K0V03_01380) yqhG 237979..238773 (+) 795 WP_003230200.1 YqhG family protein -
  K0V03_RS01385 (K0V03_01385) sinI 238956..239129 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  K0V03_RS01390 (K0V03_01390) sinR 239163..239498 (+) 336 WP_121548932.1 transcriptional regulator SinR Regulator
  K0V03_RS01395 (K0V03_01395) tasA 239591..240376 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  K0V03_RS01400 (K0V03_01400) sipW 240440..241012 (-) 573 WP_003230181.1 signal peptidase I SipW -
  K0V03_RS01405 (K0V03_01405) tapA 240996..241757 (-) 762 WP_085186488.1 amyloid fiber anchoring/assembly protein TapA -
  K0V03_RS01410 (K0V03_01410) yqzG 242028..242354 (+) 327 WP_085186489.1 YqzG/YhdC family protein -
  K0V03_RS01415 (K0V03_01415) spoIITA 242396..242575 (-) 180 WP_003230176.1 YqzE family protein -
  K0V03_RS01420 (K0V03_01420) comGG 242647..243021 (-) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  K0V03_RS01425 (K0V03_01425) comGF 243022..243405 (-) 384 WP_085186490.1 ComG operon protein ComGF Machinery gene
  K0V03_RS01430 (K0V03_01430) comGE 243431..243778 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  K0V03_RS01435 (K0V03_01435) comGD 243762..244193 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  K0V03_RS01440 (K0V03_01440) comGC 244183..244479 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12987.66 Da        Isoelectric Point: 8.3802

>NTDB_id=593284 K0V03_RS01390 WP_121548932.1 239163..239498(+) (sinR) [Bacillus subtilis strain HD15]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRNAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=593284 K0V03_RS01390 WP_121548932.1 239163..239498(+) (sinR) [Bacillus subtilis strain HD15]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCAATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991