Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   K0819_RS11080 Genome accession   NZ_CP080478
Coordinates   2314877..2317135 (-) Length   752 a.a.
NCBI ID   WP_109883566.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2295211..2319812 2314877..2317135 within 0


Gene organization within MGE regions


Location: 2295211..2319812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS11005 (K0819_10950) - 2295211..2295981 (-) 771 WP_005456207.1 ABC transporter ATP-binding protein -
  K0819_RS11010 (K0819_10955) - 2296224..2297690 (-) 1467 WP_024699960.1 hypothetical protein -
  K0819_RS11015 (K0819_10960) - 2298147..2299694 (+) 1548 WP_109883570.1 DUF3360 family protein -
  K0819_RS11020 (K0819_10965) pflB 2300001..2302277 (+) 2277 WP_005456189.1 formate C-acetyltransferase -
  K0819_RS11025 (K0819_10970) - 2302430..2303407 (+) 978 WP_005481800.1 lipid A deacylase LpxR family protein -
  K0819_RS11030 (K0819_10975) pflA 2303554..2304294 (+) 741 WP_005456250.1 pyruvate formate lyase 1-activating protein -
  K0819_RS11035 (K0819_10980) - 2304455..2305123 (+) 669 WP_017448256.1 energy-coupling factor ABC transporter permease -
  K0819_RS11040 (K0819_10985) - 2305278..2305778 (+) 501 WP_005456271.1 YfbU family protein -
  K0819_RS11045 (K0819_10990) - 2306267..2308201 (+) 1935 WP_005456210.1 PrkA family serine protein kinase -
  K0819_RS11050 (K0819_10995) - 2308249..2309520 (+) 1272 WP_005481863.1 YeaH/YhbH family protein -
  K0819_RS11055 (K0819_11000) - 2309532..2311091 (+) 1560 WP_005456192.1 SpoVR family protein -
  K0819_RS11060 (K0819_11005) kdsB 2311169..2311924 (-) 756 WP_005456221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K0819_RS11065 (K0819_11010) - 2311924..2312103 (-) 180 WP_005378451.1 Trm112 family protein -
  K0819_RS11070 (K0819_11015) lpxK 2312084..2313091 (-) 1008 WP_025508123.1 tetraacyldisaccharide 4'-kinase -
  K0819_RS11075 (K0819_11020) msbA 2313097..2314845 (-) 1749 WP_109883568.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K0819_RS11080 (K0819_11025) comEC 2314877..2317135 (-) 2259 WP_109883566.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K0819_RS11085 (K0819_11030) - 2317144..2317653 (+) 510 WP_005456245.1 DUF2062 domain-containing protein -
  K0819_RS11090 (K0819_11035) lolE 2317858..2319102 (-) 1245 WP_109883564.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  K0819_RS11095 (K0819_11040) lolD 2319105..2319812 (-) 708 WP_005456257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84574.14 Da        Isoelectric Point: 9.4333

>NTDB_id=593197 K0819_RS11080 WP_109883566.1 2314877..2317135(-) (comEC) [Vibrio parahaemolyticus strain Vp2015094]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSYWVIRTSSSWREAIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVVLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVEGSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWCLLDVFLVPLSWSVRYAIGTWQPISTEWTFVIAVVSAVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVIRPVLHRRGYSIVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSSGFKMLFTGDIE
AISEWILLREPDKLLSDVMLVPHHGSKSSSNLKFINAVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=593197 K0819_RS11080 WP_109883566.1 2314877..2317135(-) (comEC) [Vibrio parahaemolyticus strain Vp2015094]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGGTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCATTTTGCTCTAATCAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGACTACTGCATCTTGTATCAATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTAGTGTTATTGGCTGTGGCGTTACAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTATTTGCGGTTAA
CACAGTGGAAGGCTCGAAGGAAGGGCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTG
TTTGCTTGACGTGTTCCTTGTACCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTACCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGCCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACAGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTGCTGGTTGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAAGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTAGGCCAGTACTGCACCGCAGAGGCTACTCAATTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAACATAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTTCAGGTTTTAAAATGTTGTTCACTGGTGATATCGAA
GCCATCAGTGAATGGATACTGCTTCGAGAGCCAGATAAGCTGCTCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AAGCTCTTCTAACCTTAAGTTTATCAATGCTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

97.739

100

0.977
  comEC Vibrio campbellii strain DS40M4

66.622

100

0.666
  comEC Vibrio cholerae strain A1552

41.48

100

0.418