Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K1T74_RS01530 Genome accession   NZ_CP080462
Coordinates   326879..327511 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain ICDC-VC702     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 321879..332511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS01510 - 322029..323240 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  K1T74_RS01515 astA 323380..324399 (+) 1020 WP_002162681.1 arginine N-succinyltransferase -
  K1T74_RS01520 astD 324409..325866 (+) 1458 WP_220105970.1 succinylglutamate-semialdehyde dehydrogenase -
  K1T74_RS01525 - 326009..326800 (+) 792 WP_033928896.1 DUF1338 domain-containing protein -
  K1T74_RS01530 crp 326879..327511 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  K1T74_RS01535 - 327754..328623 (-) 870 WP_001274667.1 phosphoribulokinase -
  K1T74_RS01540 - 328720..328929 (-) 210 WP_001888622.1 YheU family protein -
  K1T74_RS01545 - 329058..330047 (-) 990 WP_000206394.1 hydrolase -
  K1T74_RS01550 - 330044..330529 (-) 486 WP_001278735.1 TIGR02444 family protein -
  K1T74_RS01555 - 330530..332446 (-) 1917 WP_220105971.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=593041 K1T74_RS01530 WP_000242749.1 326879..327511(-) (crp) [Vibrio cholerae strain ICDC-VC702]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=593041 K1T74_RS01530 WP_000242749.1 326879..327511(-) (crp) [Vibrio cholerae strain ICDC-VC702]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCCGATGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467