Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Sta0113_RS07750 Genome accession   NZ_CP080457
Coordinates   1580007..1580879 (+) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis subsp. hominis strain WiKim0113     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1575007..1585879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta0113_RS07730 (Sta0113_07670) ylqF 1575894..1576778 (+) 885 WP_017174591.1 ribosome biogenesis GTPase YlqF -
  Sta0113_RS07735 (Sta0113_07675) - 1576762..1577529 (+) 768 WP_049379251.1 ribonuclease HII -
  Sta0113_RS07740 (Sta0113_07680) sucC 1577656..1578822 (+) 1167 WP_137689512.1 ADP-forming succinate--CoA ligase subunit beta -
  Sta0113_RS07745 (Sta0113_07685) sucD 1578844..1579749 (+) 906 WP_019835581.1 succinate--CoA ligase subunit alpha -
  Sta0113_RS07750 (Sta0113_07690) dprA 1580007..1580879 (+) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  Sta0113_RS07755 (Sta0113_07695) topA 1581018..1583087 (+) 2070 WP_017174596.1 type I DNA topoisomerase -
  Sta0113_RS07760 (Sta0113_07700) trmFO 1583111..1584418 (+) 1308 WP_002455420.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Sta0113_RS07765 (Sta0113_07705) xerC 1584556..1585449 (+) 894 WP_017174598.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=592974 Sta0113_RS07750 WP_019835580.1 1580007..1580879(+) (dprA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=592974 Sta0113_RS07750 WP_019835580.1 1580007..1580879(+) (dprA) [Staphylococcus hominis subsp. hominis strain WiKim0113]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTTAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369