Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KY494_RS21835 Genome accession   NZ_CP080377
Coordinates   4869476..4870546 (+) Length   356 a.a.
NCBI ID   WP_219888223.1    Uniprot ID   -
Organism   Janthinobacterium sp. PAMC25594     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4864476..4875546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY494_RS21815 (KY494_21815) - 4864942..4866936 (+) 1995 WP_219888221.1 MacB family efflux pump subunit -
  KY494_RS21820 (KY494_21820) - 4867079..4868068 (+) 990 WP_375143384.1 ABC transporter substrate-binding protein -
  KY494_RS21825 (KY494_21825) - 4868300..4869103 (+) 804 WP_219132750.1 inner membrane protein YpjD -
  KY494_RS21830 (KY494_21830) - 4869100..4869357 (+) 258 WP_219888222.1 PP0621 family protein -
  KY494_RS21835 (KY494_21835) pilR 4869476..4870546 (+) 1071 WP_219888223.1 sigma 54-interacting transcriptional regulator Regulator
  KY494_RS21840 (KY494_21840) ampD 4870546..4871157 (+) 612 WP_219132948.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KY494_RS21845 (KY494_21845) - 4871540..4874494 (+) 2955 WP_219888224.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38048.40 Da        Isoelectric Point: 9.2715

>NTDB_id=592395 KY494_RS21835 WP_219888223.1 4869476..4870546(+) (pilR) [Janthinobacterium sp. PAMC25594]
MSSPSPSPSPSPHAVTAAGMPPAPQLSGNSLPMQALRAQIARIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIA
VNCGAIPEALMEAEFFGCRQGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSADEAVDV
RILCASQHGLARGVAAGTFRQDLFYRLQVIELALPPLRERRGDLQVLCEVILARLAPRQAVSLAPPVLAALAAYAFPGNV
RELENLLERALAFADGGVIALDALALPCAAGSMPLRAAPEPPAAPERQLCLPGMAAYGVPPVLPLDMYLRQAERDMIMQA
LLQARYHRARAARQLGLSVRQLRYRMQKLTIQEALP

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=592395 KY494_RS21835 WP_219888223.1 4869476..4870546(+) (pilR) [Janthinobacterium sp. PAMC25594]
ATGTCCAGCCCCAGCCCCAGCCCCAGTCCTAGCCCGCATGCCGTGACCGCCGCCGGCATGCCACCGGCGCCTCAACTGAG
CGGCAACTCCCTGCCCATGCAGGCGCTGCGTGCGCAGATCGCCCGTATCGCCCGCTGTGGCGCGCCAGTGGCCATCCGCG
GCGAATCGGGTACGGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGTGCGCGCGCCAGCTTCCCTTTTATTGCC
GTCAACTGCGGCGCGATTCCCGAAGCGTTGATGGAGGCCGAATTCTTCGGCTGCCGCCAAGGCGCCTATACGGGTGCGCT
GCATGAGCGCCAGGGATTGTTCCAGGCGGCCCATGGCGGCAGTTTGCTGCTCGATGAAGTCGACGATCTGCCGCTGGCCA
TGCAGGTCAAGCTGTTGCGCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGTAGTGCTGACGAGGCCGTCGACGTG
CGCATCCTGTGCGCCAGCCAGCATGGCCTGGCGCGCGGCGTGGCCGCCGGCACGTTTCGCCAGGATCTGTTTTACCGCCT
CCAGGTGATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGC
GTCTGGCGCCACGCCAGGCCGTGAGCCTGGCGCCGCCCGTGCTGGCGGCTCTGGCCGCGTATGCGTTTCCCGGCAATGTG
CGCGAACTGGAAAACCTGCTGGAGCGGGCACTGGCCTTTGCCGACGGCGGCGTGATTGCCCTCGACGCGCTGGCCTTGCC
GTGCGCGGCGGGCAGCATGCCGTTGCGGGCGGCGCCGGAACCGCCGGCCGCGCCGGAGCGGCAGCTGTGCCTGCCCGGCA
TGGCGGCATATGGCGTGCCGCCCGTCTTGCCGCTGGACATGTATTTACGCCAGGCCGAGCGCGACATGATCATGCAGGCG
CTGCTGCAGGCGCGCTATCACCGCGCACGGGCGGCGCGCCAGCTGGGCCTGAGCGTGCGCCAGCTGCGTTACCGCATGCA
GAAATTGACGATACAGGAAGCGCTACCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(27-192)

Bacterial regulatory protein, Fis family (HTH_8)

(309-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.94

94.101

0.489
  pilR Acinetobacter baumannii strain A118

43.844

93.539

0.41
  luxO Vibrio cholerae strain A1552

39.571

91.573

0.362