Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K0P33_RS19165 Genome accession   NZ_CP080330
Coordinates   4216017..4218242 (-) Length   741 a.a.
NCBI ID   WP_242150551.1    Uniprot ID   -
Organism   Pseudomonas sp. ArH3a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4211017..4223242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0P33_RS19130 (K0P33_19060) murB 4211386..4212405 (-) 1020 WP_242150548.1 UDP-N-acetylmuramate dehydrogenase -
  K0P33_RS19135 (K0P33_19065) - 4212402..4212866 (-) 465 WP_094952287.1 low molecular weight protein-tyrosine-phosphatase -
  K0P33_RS19140 (K0P33_19070) kdsB 4212866..4213630 (-) 765 WP_094952288.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K0P33_RS19145 (K0P33_19075) - 4213627..4213812 (-) 186 WP_094952289.1 Trm112 family protein -
  K0P33_RS19150 (K0P33_19080) lpxK 4213837..4214847 (-) 1011 WP_094952290.1 tetraacyldisaccharide 4'-kinase -
  K0P33_RS19155 (K0P33_19085) - 4214847..4215275 (-) 429 WP_094952291.1 biopolymer transporter ExbD -
  K0P33_RS19160 (K0P33_19090) exbB 4215272..4215907 (-) 636 WP_094952292.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K0P33_RS19165 (K0P33_19095) comA 4216017..4218242 (-) 2226 WP_242150551.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K0P33_RS19170 (K0P33_19100) - 4218378..4218893 (+) 516 WP_242150554.1 DUF2062 domain-containing protein -
  K0P33_RS19175 (K0P33_19105) - 4218897..4220267 (-) 1371 WP_242156081.1 sensor histidine kinase -
  K0P33_RS19180 (K0P33_19110) - 4220254..4220979 (-) 726 WP_094952296.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80236.09 Da        Isoelectric Point: 10.8902

>NTDB_id=592191 K0P33_RS19165 WP_242150551.1 4216017..4218242(-) (comA) [Pseudomonas sp. ArH3a]
MRTGMFALGLGLLSLRFFPSLPPAGWLLAMLAVALMLLPFRTHPLAFFLVGLCWACISAQWALDDRLKPALDGQTRWVQG
RVIGLPQQTSTGVRFELADSRSRTARVPKRIRVSWHGGPRVNSGEYWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATA
SVKDGQRLAPARNAWRDSLRQRLKAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRAMPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVGVLVLAFSGRLGPWNWWQAWTRAQWMIAIGLFPVLLVLGLPISLSAPVANVFAVPWISLVVLPLAL
VGAVLLAVPFVGEGLLWLAGGALDGLFRGLALLAGQRPAWIPAEVPLGYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRQLVPHGQVEVTQLDVGQGQALILRTRHHTLLYDVGPRSGAFDLGERVVLPALRTLGVGTLDMMVISHAHADHAGGA
AAVALALSVKRVVGGETEGLPALLATQRCISGEQWEWDGVSFELWQWPGATSSNPKSCVLRVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSEPFLARLAPKSVLISSGRGNAFGHPHPQVMQRYQALSSRVYDSAEQGAVRLQL
GAFQSPVVARGQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=592191 K0P33_RS19165 WP_242150551.1 4216017..4218242(-) (comA) [Pseudomonas sp. ArH3a]
ATGAGAACAGGGATGTTTGCGCTCGGACTTGGACTGCTTTCACTGCGATTTTTCCCGTCTCTACCGCCGGCCGGATGGCT
ACTGGCGATGTTGGCGGTGGCCTTGATGCTGTTGCCTTTTCGCACCCACCCTCTGGCGTTCTTCCTCGTGGGCTTGTGCT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGCGCTGGATGGGCAAACGCGCTGGGTGCAGGGG
CGTGTGATCGGGTTGCCGCAGCAGACCAGCACCGGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGAGT
GCCCAAGCGCATCCGGGTGTCCTGGCACGGTGGCCCGCGGGTCAATAGCGGCGAGTATTGGCGCTTGGCGGTGACGTTGA
AGCGGCCATCGGGGTTGCTCAATTTTCATGGCTTTGACTACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCAACCGCC
TCGGTAAAAGACGGCCAGCGCTTGGCGCCGGCTCGCAACGCCTGGCGCGACAGCCTCCGCCAGCGCCTGAAAGCCGTGGA
TGCCCAGGGCCGCGAGGCTGGCCTGGCGGCACTGGTGCTGGGCGACGGCTCAGGGCTGGCCGCTGAAGATTGGCGGGTGC
TGCAGGACACCGGAACCGTGCACCTGCTGGTGATTTCCGGCCAACACATCGGTTTGTTGGCGGGGCTGATCTACGGCTTG
GTGGCCGGGCTGGCGCGCTACGGTTGCTGGCCTCGAGCAATGCCGTGGCTGCCGTGGGCGTGCGGCCTAGCGTTTGCCGC
CGCGCTGGGGTACGGCTTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCATGTGTGATGGTCGGGTTGGTCCTGCTCT
GGCGTTTGCGCTTTCGGCATTTGGGCGTCTGGTGGCCGTTGTTGCTGGCGCTCAATGGCGTGCTGATATTGGAACCATTG
GCCAGTTTGCAGCCAGGATTCTGGCTGTCGTTTGCCGCCGTTGGGGTGCTGGTGCTGGCCTTCAGCGGGCGCCTGGGGCC
ATGGAACTGGTGGCAAGCATGGACGCGTGCGCAGTGGATGATCGCCATCGGCTTGTTTCCAGTGTTGCTGGTGCTCGGCT
TGCCCATCAGCCTCAGTGCGCCCGTGGCTAACGTGTTTGCCGTGCCGTGGATCAGCCTCGTGGTGTTGCCCTTGGCGCTG
GTCGGGGCTGTGCTGCTGGCGGTACCGTTTGTGGGCGAGGGCTTGTTGTGGCTGGCAGGCGGGGCGCTGGATGGGCTGTT
CAGGGGCTTGGCACTGCTGGCAGGGCAGCGCCCGGCCTGGATACCGGCCGAGGTGCCCTTGGGTTATTGGTTAGTGAGCC
TGGCGGGCGCGGTACTGCTGCTGTTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTATTGCTGGCGGTC
TTCCCGCCCAGGCAACTGGTGCCTCATGGGCAAGTAGAAGTAACGCAGTTGGATGTTGGCCAGGGGCAAGCGCTGATCCT
GCGCACACGCCACCACACGCTGCTTTACGACGTAGGGCCGCGCTCGGGGGCATTTGACCTTGGTGAGCGCGTGGTACTGC
CTGCGCTCAGAACGCTCGGAGTAGGGACGTTGGACATGATGGTGATCAGCCATGCTCACGCTGATCATGCCGGAGGCGCG
GCCGCGGTTGCCCTTGCGCTTTCGGTAAAGCGCGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCATTGCTTGCCACACA
GCGCTGTATCAGCGGTGAGCAGTGGGAGTGGGATGGCGTGTCATTTGAACTGTGGCAGTGGCCTGGCGCCACTAGTAGCA
ACCCGAAATCCTGTGTGTTGCGGGTACAGGCTAACGGTGAACGACTGCTGCTGACCGGCGATATTGACCGCGCCGCCGAA
CAGGCTTTTCTCGCATCTCCCTTGGCCGTACCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCGTC
CGAGCCCTTCCTGGCGCGGCTTGCGCCTAAGTCGGTGCTGATTTCCAGTGGCCGTGGCAACGCATTCGGTCATCCCCATC
CGCAGGTGATGCAGCGTTATCAGGCACTCAGCAGCCGGGTGTACGACAGCGCCGAGCAAGGTGCCGTACGTCTGCAACTG
GGCGCATTTCAATCACCTGTTGTTGCGCGCGGTCAACGCCGTTTCTGGCGTGAAGCGTTACCGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.34

100

0.368