Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K0P33_RS19160 Genome accession   NZ_CP080330
Coordinates   4215272..4215907 (-) Length   211 a.a.
NCBI ID   WP_094952292.1    Uniprot ID   -
Organism   Pseudomonas sp. ArH3a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4210272..4220907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0P33_RS19125 (K0P33_19055) - 4210652..4211323 (+) 672 WP_094952285.1 Bax inhibitor-1/YccA family protein -
  K0P33_RS19130 (K0P33_19060) murB 4211386..4212405 (-) 1020 WP_242150548.1 UDP-N-acetylmuramate dehydrogenase -
  K0P33_RS19135 (K0P33_19065) - 4212402..4212866 (-) 465 WP_094952287.1 low molecular weight protein-tyrosine-phosphatase -
  K0P33_RS19140 (K0P33_19070) kdsB 4212866..4213630 (-) 765 WP_094952288.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K0P33_RS19145 (K0P33_19075) - 4213627..4213812 (-) 186 WP_094952289.1 Trm112 family protein -
  K0P33_RS19150 (K0P33_19080) lpxK 4213837..4214847 (-) 1011 WP_094952290.1 tetraacyldisaccharide 4'-kinase -
  K0P33_RS19155 (K0P33_19085) - 4214847..4215275 (-) 429 WP_094952291.1 biopolymer transporter ExbD -
  K0P33_RS19160 (K0P33_19090) exbB 4215272..4215907 (-) 636 WP_094952292.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K0P33_RS19165 (K0P33_19095) comA 4216017..4218242 (-) 2226 WP_242150551.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K0P33_RS19170 (K0P33_19100) - 4218378..4218893 (+) 516 WP_242150554.1 DUF2062 domain-containing protein -
  K0P33_RS19175 (K0P33_19105) - 4218897..4220267 (-) 1371 WP_242156081.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23053.23 Da        Isoelectric Point: 6.8768

>NTDB_id=592190 K0P33_RS19160 WP_094952292.1 4215272..4215907(-) (exbB) [Pseudomonas sp. ArH3a]
MWELVKSGGWMMLPIIMSSIAALGIIAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=592190 K0P33_RS19160 WP_094952292.1 4215272..4215907(-) (exbB) [Pseudomonas sp. ArH3a]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCATCACGCCTGAGCATCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAAGACAAGCTCAAGGAACTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCCGCGGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCGGCCGCACGGGTCATCCATGAAATGGAGCGCTACAT
CAATGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTTGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACTAACGCCGCCGTGTTGGCCGGCGGTATCTCCAAGGCCTTGATCACCACGGCT
GCGGGCTTGATGGTTGGTATTCCCTCGGTATTTTTCCACCGGTTCCTGCAGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAAGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGCGATGTCGATTTCGTCGAGGGCCGAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834