Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   M2I89_RS28255 Genome accession   NZ_CP096937
Coordinates   5994401..5995024 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain NY5520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5989401..6000024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I89_RS28235 (M2I89_28175) aroB 5990013..5991119 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  M2I89_RS28240 (M2I89_28180) aroK 5991169..5991687 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M2I89_RS28245 (M2I89_28185) pilQ 5991699..5993826 (-) 2128 Protein_5576 type 4a pilus secretin PilQ -
  M2I89_RS28250 (M2I89_28190) comL/pilP 5993880..5994404 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M2I89_RS28255 (M2I89_28195) pilO 5994401..5995024 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M2I89_RS28260 (M2I89_28200) pilN 5995021..5995617 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M2I89_RS28265 (M2I89_28205) pilM 5995617..5996681 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M2I89_RS28270 (M2I89_28210) - 5996866..5999339 (+) 2474 Protein_5581 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=592028 M2I89_RS28255 WP_003103268.1 5994401..5995024(-) (pilO) [Pseudomonas aeruginosa strain NY5520]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=592028 M2I89_RS28255 WP_003103268.1 5994401..5995024(-) (pilO) [Pseudomonas aeruginosa strain NY5520]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401