Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCA10_RS04655 Genome accession   NC_021499
Coordinates   1005253..1006590 (-) Length   445 a.a.
NCBI ID   WP_016490876.1    Uniprot ID   S6BC98
Organism   Metapseudomonas resinovorans NBRC 106553     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000253..1011590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCA10_RS04625 (PCA10_09360) - 1000964..1001449 (-) 486 WP_016490870.1 PilX N-terminal domain-containing pilus assembly protein -
  PCA10_RS04630 (PCA10_09370) - 1001446..1002393 (-) 948 WP_016490871.1 PilW family protein -
  PCA10_RS04635 (PCA10_09380) pilV 1002390..1002980 (-) 591 WP_016490872.1 type IV pilus modification protein PilV -
  PCA10_RS04640 (PCA10_09390) - 1002971..1003465 (-) 495 WP_016490873.1 GspH/FimT family pseudopilin -
  PCA10_RS29195 (PCA10_09400) - 1003546..1004079 (-) 534 WP_016490874.1 GspH/FimT family protein -
  PCA10_RS04650 (PCA10_09410) thiO 1004133..1005242 (+) 1110 WP_016490875.1 glycine oxidase ThiO -
  PCA10_RS04655 (PCA10_09420) pilR 1005253..1006590 (-) 1338 WP_016490876.1 sigma-54 dependent transcriptional regulator Regulator
  PCA10_RS04660 (PCA10_09430) pilS 1006593..1008194 (-) 1602 WP_016490877.1 PAS domain-containing sensor histidine kinase Regulator
  PCA10_RS04665 (PCA10_09440) - 1008184..1008420 (-) 237 WP_016490878.1 PP0621 family protein -
  PCA10_RS04670 (PCA10_09450) - 1008591..1010222 (+) 1632 WP_016490879.1 NAD+ synthase -
  PCA10_RS04675 (PCA10_09460) - 1010281..1011300 (-) 1020 WP_016490880.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49544.84 Da        Isoelectric Point: 5.8101

>NTDB_id=59192 PCA10_RS04655 WP_016490876.1 1005253..1006590(-) (pilR) [Metapseudomonas resinovorans NBRC 106553]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHPLVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSTPEDGEAPVDGRLLGASPPMNALRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRADQPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLVDSM
LKRLAQQSGLHVASLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLADASGAAENGEANLAQIDNLED
YLEGVERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=59192 PCA10_RS04655 WP_016490876.1 1005253..1006590(-) (pilR) [Metapseudomonas resinovorans NBRC 106553]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAATTGCTGGAGATCACCCTCGGGCGGATGAA
GCTCGACACCCGCAGTGCCCGCAACCTCAAGGAAGCCCGCGAGTGGCTGGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCCATCCCCTGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCCGTGAACGCCCTCAAGGCCGGTGCCTTCGACTTCGTCACCAAACCGGTGGA
CCTCGGCCGCCTGCGTGAGCTGGTCAACACCGCCCTGCGCCTGAGCACCCCGGAAGACGGCGAAGCGCCGGTAGACGGCC
GCCTGCTGGGCGCCTCGCCGCCGATGAACGCCCTGCGCAAGCAGATCCAGAAGCTCTCCCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAACAGGGCCCCCGCGCCGACCAGCCCTT
CGTGCCGGTCAACTGCGGCGCCATCCCCTCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAACAGGGGCTGTTCCAGGCGGCCAACGGCGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCG
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCCGTCGGTGGCCAGCAGGAGGTGGTGGT
GGATGTACGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCCGAGGTGGCCGCAGGCCGCTTCCGCCAGGACCTCTACT
ACCGGCTCAACGTCATCGAACTCAGCGTGCCGCCACTGCGCGAACGCCGCGAGGATATCCCGCTGCTGGTCGACAGCATG
CTCAAGCGCCTGGCCCAGCAAAGCGGGCTGCACGTCGCCAGCCTGGCCCCCGAGGCACTGGATAAGCTCAAGTGCTACCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAGGATGACCAGATACAGGCTC
GCGACCTGCGTCTGGCGGATGCCAGCGGAGCCGCCGAGAACGGCGAGGCCAACCTGGCGCAGATCGACAACCTGGAAGAC
TACCTGGAAGGCGTCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCAGCGGCGCAGCG
CCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6BC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.861
  pilR Acinetobacter baumannii strain A118

49.237

100

0.508

Multiple sequence alignment