Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PCA10_RS04660 Genome accession   NC_021499
Coordinates   1006593..1008194 (-) Length   533 a.a.
NCBI ID   WP_016490877.1    Uniprot ID   -
Organism   Metapseudomonas resinovorans NBRC 106553     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001593..1013194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCA10_RS04635 (PCA10_09380) pilV 1002390..1002980 (-) 591 WP_016490872.1 type IV pilus modification protein PilV -
  PCA10_RS04640 (PCA10_09390) - 1002971..1003465 (-) 495 WP_016490873.1 GspH/FimT family pseudopilin -
  PCA10_RS29195 (PCA10_09400) - 1003546..1004079 (-) 534 WP_016490874.1 GspH/FimT family protein -
  PCA10_RS04650 (PCA10_09410) thiO 1004133..1005242 (+) 1110 WP_016490875.1 glycine oxidase ThiO -
  PCA10_RS04655 (PCA10_09420) pilR 1005253..1006590 (-) 1338 WP_016490876.1 sigma-54 dependent transcriptional regulator Regulator
  PCA10_RS04660 (PCA10_09430) pilS 1006593..1008194 (-) 1602 WP_016490877.1 PAS domain-containing sensor histidine kinase Regulator
  PCA10_RS04665 (PCA10_09440) - 1008184..1008420 (-) 237 WP_016490878.1 PP0621 family protein -
  PCA10_RS04670 (PCA10_09450) - 1008591..1010222 (+) 1632 WP_016490879.1 NAD+ synthase -
  PCA10_RS04675 (PCA10_09460) - 1010281..1011300 (-) 1020 WP_016490880.1 outer membrane protein assembly factor BamD -
  PCA10_RS04680 (PCA10_09470) rluD 1011448..1012422 (+) 975 WP_016490881.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCA10_RS04685 (PCA10_09480) pgeF 1012419..1013144 (+) 726 WP_016490882.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58999.98 Da        Isoelectric Point: 8.6109

>NTDB_id=59193 PCA10_RS04660 WP_016490877.1 1006593..1008194(-) (pilS) [Metapseudomonas resinovorans NBRC 106553]
MNADTLPAPGALSAQGRRIFRLYSLYRLLIGLALVLLISSELDDRLLDLARPELFRNASWFYLILNTLIAALVPRPRSMV
QVFSLAVVDVLLLSCLFFAAGGTPSGIANLIVVSVAISNILLRGRIGLLVAAVATISLIYLTFYLSLAHPKAASQFVQAG
GFGALCFAAALFIQGLSRRLQLSETLAEQRAVDVANLEALNAQILERMRTGILVLDPRNQVLLANQGAQTLLGTEHLTGR
ALADQCPTLLESLAQWRANPTMRPQSIRAFADGPTLQPSFVHLQRANQRNTLIFLEDISQIAQQAQQLKLAALGRLTAGI
AHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLTRFASEFRSSS
SADQTLHLSTLGSTLQTRMDPHQLTQVLTNLVQNGLRYSAKRHSQGQVWLKLFRDSESDLPVLEVEDDGDGVPPEQVHNI
FEPFFTTESKGTGLGLYISRELCESNQARLDYKPREQGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=59193 PCA10_RS04660 WP_016490877.1 1006593..1008194(-) (pilS) [Metapseudomonas resinovorans NBRC 106553]
GTGAACGCTGACACCCTTCCCGCTCCGGGCGCGCTCAGCGCCCAGGGCCGGCGCATCTTCCGCCTCTACAGCCTGTACCG
GCTGCTGATCGGCCTGGCCCTGGTGCTGCTGATCTCCAGCGAGCTGGACGACCGCCTGCTGGACCTGGCCCGGCCGGAGC
TGTTCCGCAACGCCAGCTGGTTCTACCTGATCCTCAACACCCTGATCGCCGCCCTGGTGCCACGCCCGCGGAGCATGGTG
CAGGTGTTCAGCCTGGCGGTGGTGGACGTGCTGCTGCTGTCCTGCCTGTTCTTCGCCGCAGGCGGCACACCCAGCGGCAT
CGCCAACCTGATCGTTGTGTCAGTGGCCATCTCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGGTGGCGGCGGTGG
CGACCATCAGCCTGATCTACCTGACCTTCTACCTCAGCCTCGCCCACCCGAAGGCCGCCAGCCAGTTCGTCCAGGCCGGC
GGCTTCGGCGCCCTGTGCTTCGCCGCGGCGCTGTTCATCCAGGGCCTGAGCCGACGCCTGCAACTGAGCGAAACCCTCGC
CGAACAGCGCGCCGTGGATGTCGCCAACCTGGAAGCGCTGAACGCGCAGATCCTCGAACGCATGCGTACCGGCATCCTGG
TGCTCGACCCACGCAACCAGGTGCTGCTGGCCAACCAGGGCGCCCAGACCCTGCTCGGCACGGAACACCTGACCGGCCGC
GCCCTGGCCGACCAGTGCCCGACACTGCTGGAAAGTCTGGCCCAGTGGCGGGCCAACCCGACCATGCGGCCGCAAAGCAT
CCGCGCCTTCGCCGACGGCCCCACCCTGCAGCCCAGCTTCGTCCACCTGCAGCGAGCCAATCAGCGCAACACCCTGATCT
TCCTCGAGGACATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTCGCCGCCCTCGGCCGCCTGACCGCCGGCATC
GCCCATGAGATCCGCAACCCGCTGGGCGCCATCAGCCACGCCGCCCAACTGCTGCAGGAATCGGAAGAGCTCGACGGTCC
CGACCGCCGCCTGGCGCAGATCATCCAGGACCATTCACGGCGCATGAACCTGGTGATCGAGAACGTGCTGCAACTGTCCC
GCCGACGCCAGGCGGAACCGCAATTGCTCGACCTCAAGTACTGGCTGACCCGTTTCGCCAGCGAATTCCGCAGCTCGTCC
AGTGCCGACCAGACCCTGCACCTGTCCACCCTCGGCAGCACCCTGCAGACCCGCATGGACCCGCACCAGCTCACCCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCGCCAAGCGGCACTCCCAGGGCCAGGTCTGGCTCAAGCTGTTCC
GCGACAGCGAAAGCGACCTGCCGGTGCTGGAAGTGGAGGATGACGGTGACGGCGTCCCGCCCGAGCAGGTGCACAATATC
TTCGAACCCTTCTTCACCACCGAAAGCAAGGGCACGGGCCTCGGCCTGTACATCTCCCGAGAGCTGTGCGAGAGCAACCA
GGCCCGCCTCGACTACAAACCGCGCGAACAAGGCGGCAGCTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.245

97.373

0.655

Multiple sequence alignment